Wall clock time and date at job start Mon Mar 30 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47380 * 2 1 4 4 C 1.37922 * 126.46594 * 270.07940 * 3 2 1 5 5 C 1.40140 * 125.31016 * 0.08861 * 4 3 2 6 6 H 1.07994 * 120.00498 * 0.26130 * 5 4 3 7 7 C 1.40375 * 119.99544 * 180.25860 * 5 4 3 8 8 N 1.30569 * 120.00403 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99757 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47170 * 60.00436 * 9 7 5 11 11 H 1.48501 * 109.47115 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47384 * 300.00068 * 9 7 5 13 13 N 1.32497 * 109.37244 * 180.29316 * 4 3 2 14 14 C 1.33823 * 109.62656 * 359.77521 * 13 4 3 15 15 C 1.40627 * 133.50582 * 179.97438 * 14 13 4 16 16 C 1.36947 * 118.23951 * 180.02562 * 15 14 13 17 17 C 1.38839 * 119.79422 * 359.97438 * 16 15 14 18 18 N 1.31804 * 121.50422 * 359.97438 * 17 16 15 19 19 C 1.32304 * 121.50242 * 0.02562 * 18 17 16 20 20 H 1.09000 * 109.46992 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.46964 * 300.00352 * 1 2 3 22 22 H 1.09006 * 109.46698 * 60.00037 * 1 2 3 23 23 H 1.09003 * 109.47303 * 239.99844 * 2 1 3 24 24 H 1.08997 * 109.46896 * 120.00153 * 2 1 3 25 25 H 0.97005 * 120.00478 * 179.97438 * 8 7 5 26 26 H 1.08001 * 120.88702 * 0.02562 * 15 14 13 27 27 H 1.07996 * 120.10127 * 180.02562 * 16 15 14 28 28 H 1.07997 * 119.24801 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2902 2.1545 -1.1092 5 6 2.1407 1.7425 -2.4403 6 1 1.7825 0.7478 -2.6608 7 6 2.4565 2.6229 -3.4871 8 7 2.8900 3.8253 -3.2206 9 14 2.2579 2.0735 -5.2614 10 1 0.8395 1.7124 -5.5120 11 1 2.6543 3.1797 -6.1694 12 1 3.1214 0.8921 -5.5135 13 7 2.7190 3.3462 -0.7198 14 6 2.7398 3.4015 0.6172 15 6 3.1001 4.4003 1.5392 16 6 2.9992 4.1159 2.8750 17 6 2.5498 2.8670 3.2824 18 7 2.2135 1.9378 2.4102 19 6 2.2895 2.1529 1.1070 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.1086 4.4336 -3.9440 26 1 3.4472 5.3662 1.2030 27 1 3.2675 4.8610 3.6093 28 1 2.4740 2.6519 4.3380 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260157586.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:58 Heat of formation + Delta-G solvation = 52.518881 kcal Electronic energy + Delta-G solvation = -14169.018215 eV Core-core repulsion = 11798.576542 eV Total energy + Delta-G solvation = -2370.441673 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.39428 -38.80369 -35.75612 -35.21605 -32.85258 -30.78067 -30.29573 -28.01169 -24.68987 -23.67070 -23.03352 -21.33721 -18.96771 -18.36103 -17.77111 -16.61287 -16.35290 -16.20173 -15.12973 -15.04149 -14.56486 -13.94389 -13.79237 -13.42608 -13.21574 -13.17815 -12.94788 -12.58267 -12.52687 -12.13133 -11.95222 -11.31967 -11.12679 -10.94546 -9.49758 -9.28631 -9.08371 -8.54283 -6.63238 0.39106 0.76299 1.42784 1.48640 1.57936 2.01570 2.27188 2.32612 3.17949 3.51233 3.68468 3.92545 4.12241 4.27680 4.32266 4.41673 4.48187 4.66988 4.77409 4.83967 5.02249 5.11031 5.22625 5.42218 5.53358 5.74493 5.85291 6.04960 6.35807 6.66597 7.00462 7.39214 7.90961 8.37074 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.010536 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.133860 B = 2657.003434 C = 3370.368282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.120 3.880 3 N -0.529 5.529 4 C 0.396 3.604 5 C -0.455 4.455 6 H 0.109 0.891 7 C 0.030 3.970 8 N -0.763 5.763 9 Si 1.005 2.995 10 H -0.253 1.253 11 H -0.271 1.271 12 H -0.252 1.252 13 N -0.576 5.576 14 C 0.019 3.981 15 C -0.112 4.112 16 C -0.159 4.159 17 C 0.047 3.953 18 N -0.494 5.494 19 C 0.164 3.836 20 H 0.103 0.897 21 H 0.037 0.963 22 H 0.047 0.953 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.287 0.713 26 H 0.125 0.875 27 H 0.168 0.832 28 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -4.351 2.599 5.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.001 4.001 3 N -0.228 5.228 4 C 0.159 3.841 5 C -0.493 4.493 6 H 0.127 0.873 7 C -0.193 4.193 8 N -0.386 5.386 9 Si 0.823 3.177 10 H -0.177 1.177 11 H -0.195 1.195 12 H -0.176 1.176 13 N -0.302 5.302 14 C -0.111 4.111 15 C -0.141 4.141 16 C -0.181 4.181 17 C -0.117 4.117 18 N -0.209 5.209 19 C -0.073 4.073 20 H 0.121 0.879 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.112 0.888 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.143 0.857 27 H 0.185 0.815 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.112 -4.470 2.255 5.434 hybrid contribution 0.096 0.297 -0.373 0.486 sum -2.016 -4.174 1.882 5.003 Atomic orbital electron populations 1.22020 0.94295 1.03551 1.01077 1.21591 0.95721 0.79421 1.03397 1.45487 1.60285 1.13442 1.03595 1.20815 0.90527 0.84435 0.88365 1.19023 1.41764 1.02062 0.86458 0.87303 1.27051 0.92196 0.93827 1.06274 1.70086 1.25797 1.06209 1.36500 0.84922 0.80323 0.79018 0.73401 1.17667 1.19503 1.17630 1.71278 1.32090 1.19604 1.07187 1.20778 1.01355 0.95133 0.93804 1.20557 1.03271 0.97837 0.92408 1.21668 1.02336 0.99149 0.94974 1.22772 1.00750 0.89579 0.98569 1.66243 1.18648 1.36359 0.99603 1.19349 1.07101 0.92635 0.88213 0.87857 0.94355 0.93333 0.88790 0.90146 0.90267 0.85748 0.81502 0.79715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 10.24 71.98 0.74 -4.29 15 2 C 0.12 4.62 6.63 86.38 0.57 5.19 15 3 N -0.53 -26.51 2.85 -518.70 -1.48 -27.98 15 4 C 0.40 22.21 7.41 133.65 0.99 23.20 15 5 C -0.46 -23.46 8.99 23.25 0.21 -23.25 15 6 H 0.11 4.93 7.10 -2.91 -0.02 4.91 15 7 C 0.03 1.47 5.50 85.40 0.47 1.94 15 8 N -0.76 -41.30 11.85 21.90 0.26 -41.04 15 9 Si 1.01 35.74 29.56 68.60 2.03 37.77 15 10 H -0.25 -8.50 7.11 99.48 0.71 -7.80 15 11 H -0.27 -9.32 7.11 99.48 0.71 -8.61 15 12 H -0.25 -8.48 7.11 99.48 0.71 -7.77 15 13 N -0.58 -34.77 9.34 -186.39 -1.74 -36.51 15 14 C 0.02 1.03 7.22 40.22 0.29 1.32 15 15 C -0.11 -5.11 10.20 22.55 0.23 -4.88 15 16 C -0.16 -5.75 10.03 22.11 0.22 -5.53 15 17 C 0.05 1.76 11.16 84.84 0.95 2.71 15 18 N -0.49 -22.55 10.39 -191.95 -1.99 -24.55 15 19 C 0.16 8.51 8.01 134.13 1.07 9.59 15 20 H 0.10 2.52 8.14 -2.39 -0.02 2.50 15 21 H 0.04 1.37 8.14 -2.39 -0.02 1.35 15 22 H 0.05 1.73 8.14 -2.38 -0.02 1.71 15 23 H 0.09 3.29 7.32 -2.39 -0.02 3.28 15 24 H 0.08 2.90 8.14 -2.39 -0.02 2.88 15 25 H 0.29 13.94 8.29 -92.70 -0.77 13.17 15 26 H 0.12 5.30 8.06 -2.91 -0.02 5.28 15 27 H 0.17 4.31 8.06 -2.91 -0.02 4.28 15 28 H 0.19 5.03 8.06 -2.91 -0.02 5.01 15 Total: -1.00 -70.10 250.15 3.98 -66.11 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 1.17 Total: 20.20 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.74 Total: 6.00 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -4.95 Total: -130.08 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Total: -70.10 3.98 -66.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260157586.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.632 kcal (2) G-P(sol) polarization free energy of solvation -70.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds