Wall clock time and date at job start Mon Mar 30 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 N 1.30286 * 126.13161 * 60.01739 * 12 2 1 14 14 N 1.39945 * 110.10859 * 180.02562 * 13 12 2 15 15 H 0.97002 * 125.43688 * 180.02562 * 14 13 12 16 16 C 1.36464 * 109.11845 * 0.02562 * 14 13 12 17 17 C 1.39502 * 134.98543 * 180.02562 * 16 14 13 18 18 C 1.36567 * 118.94167 * 179.20081 * 17 16 14 19 19 N 1.32399 * 121.66403 * 0.69873 * 18 17 16 20 20 C 1.31564 * 122.33763 * 359.55399 * 19 18 17 21 21 C 1.39650 * 119.99110 * 359.97438 * 20 19 18 22 22 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 24 24 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.08004 * 120.52647 * 359.97438 * 17 16 14 27 27 H 1.08004 * 119.16329 * 180.22786 * 18 17 16 28 28 H 1.08003 * 120.00133 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 6 2.0324 -0.7104 1.2304 13 7 1.7927 -1.9496 1.5537 14 7 2.4226 -2.2616 2.7638 15 1 2.3910 -3.1231 3.2086 16 6 3.0884 -1.1604 3.2180 17 6 3.8731 -0.8736 4.3352 18 6 4.4109 0.3753 4.4620 19 7 4.1946 1.3201 3.5600 20 6 3.4602 1.1146 2.4879 21 6 2.8775 -0.1357 2.2701 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7011 1.1560 -3.4844 26 1 4.0626 -1.6309 5.0816 27 1 5.0221 0.6002 5.3236 28 1 3.3087 1.9125 1.7760 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260195750.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:39 Heat of formation + Delta-G solvation = 83.894970 kcal Electronic energy + Delta-G solvation = -13914.994201 eV Core-core repulsion = 11545.913097 eV Total energy + Delta-G solvation = -2369.081104 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.05573 -37.81675 -34.64540 -32.20681 -30.65365 -30.04441 -28.76436 -25.18460 -23.50259 -22.72309 -22.16586 -18.83179 -17.80872 -16.76916 -16.07241 -15.49058 -14.72224 -14.57272 -14.07886 -13.84569 -13.06257 -12.68316 -12.53254 -11.77186 -11.39295 -11.01101 -10.92071 -10.67495 -10.35281 -10.15463 -9.76476 -9.74853 -9.26188 -8.98820 -8.59922 -8.42763 -7.85587 -6.06434 -4.12570 1.15333 1.78840 3.09315 3.11569 3.30220 3.36623 3.41336 4.19100 4.41306 4.71925 4.85048 5.09730 5.20165 5.30479 5.35214 5.71262 6.00784 6.01983 6.23137 6.78585 6.81199 6.92201 7.06651 7.17993 7.52188 7.62880 7.81765 8.00590 8.18134 8.29279 8.38344 8.87738 9.51737 10.99607 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040633 B = 0.008178 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.929474 B = 3423.083766 C = 3543.865150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.110 3.890 3 H 0.052 0.948 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.172 3.828 13 N -0.258 5.258 14 N -0.518 5.518 15 H 0.433 0.567 16 C 0.153 3.847 17 C -0.207 4.207 18 C 0.118 3.882 19 N -0.525 5.525 20 C 0.201 3.799 21 C -0.229 4.229 22 H 0.034 0.966 23 H 0.010 0.990 24 H 0.092 0.908 25 H 0.263 0.737 26 H 0.128 0.872 27 H 0.153 0.847 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 -1.981 10.559 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.090 3.910 3 H 0.070 0.930 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.008 4.008 13 N -0.070 5.070 14 N -0.229 5.229 15 H 0.276 0.724 16 C 0.028 3.972 17 C -0.232 4.232 18 C -0.033 4.033 19 N -0.237 5.237 20 C 0.035 3.965 21 C -0.240 4.240 22 H 0.053 0.947 23 H 0.029 0.971 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.146 0.854 27 H 0.170 0.830 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.256 -2.204 10.281 11.008 hybrid contribution 0.370 -1.288 -0.348 1.385 sum 3.626 -3.493 9.933 11.136 Atomic orbital electron populations 1.21777 0.96591 1.00049 1.00622 1.17592 0.93321 0.94813 0.85306 0.93001 1.20967 1.31562 1.12503 0.89421 0.92380 1.24901 0.94924 0.94969 0.98917 1.69864 1.36402 1.22746 1.23708 0.86502 0.79263 0.79384 0.82346 1.20612 1.21106 1.19952 1.24746 0.91264 0.89668 0.95110 1.76881 1.17431 1.16608 0.96040 1.46141 1.45268 1.11333 1.20167 0.72362 1.19016 0.94058 0.89077 0.95074 1.20692 1.04275 0.99838 0.98390 1.22093 0.95861 0.88357 0.96996 1.67747 1.17970 1.34253 1.03692 1.22533 0.87617 0.93802 0.92500 1.21141 1.07721 0.96894 0.98233 0.94659 0.97115 0.88963 0.92731 0.85398 0.82981 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.95 37.16 0.33 -2.81 15 2 C 0.11 2.70 2.74 -92.92 -0.26 2.45 15 3 H 0.05 1.29 8.14 -51.93 -0.42 0.87 15 4 C -0.51 -13.66 8.55 -34.44 -0.29 -13.95 15 5 H 0.06 1.61 7.74 -52.49 -0.41 1.21 15 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -24.32 11.31 55.43 0.63 -23.70 15 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 12 C 0.17 3.83 5.87 -80.23 -0.47 3.36 15 13 N -0.26 -5.56 12.55 34.81 0.44 -5.13 15 14 N -0.52 -8.93 7.34 32.37 0.24 -8.70 15 15 H 0.43 5.70 8.96 -182.71 -1.64 4.06 15 16 C 0.15 2.65 7.40 -84.22 -0.62 2.03 15 17 C -0.21 -2.88 10.09 -39.71 -0.40 -3.28 15 18 C 0.12 1.64 11.08 -17.91 -0.20 1.44 15 19 N -0.53 -8.71 10.33 -13.24 -0.14 -8.85 15 20 C 0.20 3.59 11.29 -17.14 -0.19 3.40 15 21 C -0.23 -4.51 6.37 -105.24 -0.67 -5.18 15 22 H 0.03 0.84 8.14 -51.93 -0.42 0.41 15 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 24 H 0.09 2.36 6.06 -51.93 -0.31 2.04 15 25 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 26 H 0.13 1.33 8.06 -52.48 -0.42 0.91 15 27 H 0.15 1.55 8.06 -52.48 -0.42 1.12 15 28 H 0.16 2.67 8.06 -52.48 -0.42 2.25 15 LS Contribution 249.72 15.07 3.76 3.76 Total: -1.00 -29.68 249.72 -6.99 -36.68 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.03 Total: 0.79 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.87 Total: -10.91 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 1.16 Total: -46.37 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.68 -6.99 -36.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260195750.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.573 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds