Wall clock time and date at job start Mon Mar 30 2020 03:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 N 1.30286 * 126.13161 * 60.01739 * 12 2 1 14 14 N 1.39945 * 110.10859 * 180.02562 * 13 12 2 15 15 H 0.97002 * 125.43688 * 180.02562 * 14 13 12 16 16 C 1.36464 * 109.11845 * 0.02562 * 14 13 12 17 17 C 1.39502 * 134.98543 * 180.02562 * 16 14 13 18 18 C 1.36567 * 118.94167 * 179.20081 * 17 16 14 19 19 N 1.32399 * 121.66403 * 0.69873 * 18 17 16 20 20 C 1.31564 * 122.33763 * 359.55399 * 19 18 17 21 21 C 1.39650 * 119.99110 * 359.97438 * 20 19 18 22 22 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 24 24 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.08004 * 120.52647 * 359.97438 * 17 16 14 27 27 H 1.08004 * 119.16329 * 180.22786 * 18 17 16 28 28 H 1.08003 * 120.00133 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.3307 -2.1700 -4.4055 10 1 2.4720 -0.1516 -5.1155 11 1 3.6199 -1.7650 -3.7155 12 6 2.0324 -0.7104 1.2304 13 7 1.7927 -1.9496 1.5537 14 7 2.4226 -2.2616 2.7638 15 1 2.3910 -3.1231 3.2086 16 6 3.0884 -1.1604 3.2180 17 6 3.8731 -0.8736 4.3352 18 6 4.4109 0.3753 4.4620 19 7 4.1946 1.3201 3.5600 20 6 3.4602 1.1146 2.4879 21 6 2.8775 -0.1357 2.2701 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7011 1.1560 -3.4844 26 1 4.0626 -1.6309 5.0816 27 1 5.0221 0.6002 5.3236 28 1 3.3087 1.9125 1.7760 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260195750.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:39 Heat of formation + Delta-G solvation = 64.445605 kcal Electronic energy + Delta-G solvation = -13915.837589 eV Core-core repulsion = 11545.913097 eV Total energy + Delta-G solvation = -2369.924492 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.44074 -39.15096 -36.49964 -33.87342 -32.20907 -31.41988 -30.34395 -27.23665 -24.88911 -24.27483 -23.63458 -20.48433 -19.16764 -18.47251 -17.72423 -16.78858 -16.65938 -15.99545 -15.32502 -15.11437 -14.82114 -14.54694 -13.93576 -13.53368 -12.94958 -12.88212 -12.76637 -12.40723 -12.22610 -11.95265 -11.55813 -11.32025 -10.87085 -10.53633 -10.46598 -9.99940 -9.20320 -8.11331 -6.24220 -0.14173 0.48889 1.42867 1.43370 1.51734 1.58327 1.79567 2.44792 2.91877 3.16645 3.50581 3.58727 3.68271 3.93360 4.13077 4.46920 4.67776 4.81087 4.86962 5.00219 5.01963 5.15750 5.43436 5.54506 5.68586 5.79922 5.99618 6.24227 6.42762 6.72561 6.79074 7.09387 7.42539 8.93626 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040633 B = 0.008178 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.929474 B = 3423.083766 C = 3543.865150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.110 3.890 3 H 0.038 0.962 4 C -0.522 4.522 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.148 3.852 13 N -0.283 5.283 14 N -0.505 5.505 15 H 0.451 0.549 16 C 0.147 3.853 17 C -0.190 4.190 18 C 0.118 3.882 19 N -0.532 5.532 20 C 0.189 3.811 21 C -0.258 4.258 22 H 0.026 0.974 23 H 0.027 0.973 24 H 0.072 0.928 25 H 0.266 0.734 26 H 0.174 0.826 27 H 0.199 0.801 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 -2.645 12.304 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.090 3.910 3 H 0.056 0.944 4 C -0.561 4.561 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.200 1.200 12 C -0.031 4.031 13 N -0.096 5.096 14 N -0.219 5.219 15 H 0.298 0.702 16 C 0.022 3.978 17 C -0.215 4.215 18 C -0.032 4.032 19 N -0.243 5.243 20 C 0.023 3.977 21 C -0.269 4.269 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.091 0.909 25 H 0.075 0.925 26 H 0.191 0.809 27 H 0.215 0.785 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.482 -2.878 12.046 13.171 hybrid contribution 0.049 -1.086 -0.747 1.319 sum 4.531 -3.964 11.299 12.803 Atomic orbital electron populations 1.21595 0.96483 0.99288 1.00396 1.17372 0.93450 0.94172 0.86046 0.94415 1.21132 1.31719 1.12300 0.90957 0.93961 1.25573 0.95076 0.95641 1.01342 1.69957 1.36897 1.23542 1.24385 0.85612 0.78582 0.78480 0.79300 1.20245 1.20189 1.20049 1.24323 0.93016 0.90395 0.95399 1.76697 1.18304 1.16479 0.98075 1.45971 1.44705 1.12305 1.18959 0.70245 1.19379 0.94515 0.88147 0.95738 1.21175 1.01902 1.00824 0.97557 1.22890 0.95298 0.87762 0.97252 1.67806 1.17467 1.35438 1.03629 1.22581 0.88299 0.93460 0.93386 1.21224 1.08638 0.98517 0.98528 0.95513 0.95390 0.90941 0.92500 0.80906 0.78454 0.81854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.95 71.98 0.64 -5.20 15 2 C 0.11 5.58 2.74 -12.29 -0.03 5.55 15 3 H 0.04 1.98 8.14 -2.38 -0.02 1.96 15 4 C -0.52 -29.01 8.55 25.60 0.22 -28.79 15 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 6 C 0.02 1.28 5.30 84.66 0.45 1.73 15 7 N -0.91 -50.63 11.31 21.45 0.24 -50.39 15 8 Si 0.95 43.58 29.54 68.60 2.03 45.60 15 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 15 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 12 C 0.15 6.74 5.87 44.74 0.26 7.00 15 13 N -0.28 -12.25 12.55 -43.77 -0.55 -12.80 15 14 N -0.50 -16.67 7.34 -51.50 -0.38 -17.05 15 15 H 0.45 10.88 8.96 -213.42 -1.91 8.97 15 16 C 0.15 4.78 7.40 39.45 0.29 5.08 15 17 C -0.19 -4.48 10.09 22.18 0.22 -4.26 15 18 C 0.12 2.80 11.08 84.22 0.93 3.73 15 19 N -0.53 -16.50 10.33 -195.80 -2.02 -18.53 15 20 C 0.19 6.69 11.29 85.07 0.96 7.65 15 21 C -0.26 -10.11 6.37 -20.26 -0.13 -10.24 15 22 H 0.03 1.29 8.14 -2.38 -0.02 1.27 15 23 H 0.03 1.21 8.14 -2.39 -0.02 1.19 15 24 H 0.07 3.82 6.06 -2.39 -0.01 3.80 15 25 H 0.27 14.01 8.31 -92.70 -0.77 13.24 15 26 H 0.17 2.53 8.06 -2.91 -0.02 2.50 15 27 H 0.20 2.85 8.06 -2.91 -0.02 2.83 15 28 H 0.16 5.52 8.06 -2.91 -0.02 5.50 15 Total: -1.00 -64.63 249.72 2.41 -62.22 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -0.73 Total: 8.69 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 3.82 Total: -17.75 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -2.71 Total: -98.76 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -64.63 2.41 -62.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260195750.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.665 kcal (2) G-P(sol) polarization free energy of solvation -64.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds