Wall clock time and date at job start Mon Mar 30 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46960 * 2 1 4 4 C 1.50697 * 109.46915 * 240.00568 * 2 1 3 5 5 H 1.07999 * 120.00158 * 245.35037 * 4 2 1 6 6 C 1.37881 * 120.00462 * 65.34808 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.14741 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.14791 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 C 1.50697 * 109.47076 * 120.00546 * 2 1 3 13 13 N 1.30145 * 125.62343 * 60.02493 * 12 2 1 14 14 N 1.40043 * 109.75201 * 179.97438 * 13 12 2 15 15 H 0.97007 * 125.98287 * 179.97438 * 14 13 12 16 16 C 1.37046 * 108.02311 * 359.97438 * 14 13 12 17 17 C 1.39407 * 133.99590 * 179.97438 * 16 14 13 18 18 C 1.38081 * 118.23155 * 179.27491 * 17 16 14 19 19 C 1.38922 * 119.58073 * 0.58570 * 18 17 16 20 20 N 1.31277 * 121.42866 * 359.63399 * 19 18 17 21 21 C 1.33372 * 121.50444 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.47153 * 174.96744 * 1 2 3 23 23 H 1.09006 * 109.46784 * 294.96667 * 1 2 3 24 24 H 1.09001 * 109.46961 * 54.96235 * 1 2 3 25 25 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 26 26 H 1.08000 * 120.88389 * 359.97438 * 17 16 14 27 27 H 1.08004 * 120.21401 * 180.19791 * 18 17 16 28 28 H 1.07997 * 119.28238 * 179.60544 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5801 -1.6360 -1.1339 6 6 1.7926 -0.1784 -2.4798 7 7 1.2153 0.9978 -2.5939 8 14 2.2877 -1.1283 -4.0101 9 1 1.2110 -2.0864 -4.3680 10 1 2.5006 -0.1807 -5.1336 11 1 3.5449 -1.8728 -3.7455 12 6 2.0324 -0.7105 1.2304 13 7 1.7867 -1.9496 1.5436 14 7 2.4166 -2.2657 2.7537 15 1 2.3885 -3.1247 3.2036 16 6 3.0796 -1.1488 3.1910 17 6 3.8642 -0.8635 4.3075 18 6 4.4015 0.4033 4.4218 19 6 4.1388 1.3507 3.4402 20 7 3.3939 1.0673 2.3971 21 6 2.8564 -0.1422 2.2325 22 1 -0.3633 -1.0237 -0.0901 23 1 -0.3633 0.4338 0.9317 24 1 -0.3633 0.5900 -0.8414 25 1 1.0463 1.3719 -3.4728 26 1 4.0562 -1.6168 5.0572 27 1 5.0168 0.6581 5.2720 28 1 4.5562 2.3420 3.5377 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260198519.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:13 Heat of formation + Delta-G solvation = 89.029919 kcal Electronic energy + Delta-G solvation = -13940.272349 eV Core-core repulsion = 11571.413913 eV Total energy + Delta-G solvation = -2368.858436 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20759 -37.61972 -34.56209 -32.54409 -30.95556 -29.55137 -28.79521 -25.05796 -23.66934 -22.72465 -22.16401 -18.79804 -17.51754 -17.04798 -16.03155 -15.81810 -14.71831 -14.62704 -14.11520 -13.15756 -12.85011 -12.53797 -12.32713 -12.21269 -11.54474 -11.04653 -10.84350 -10.64165 -10.39079 -10.17293 -9.93747 -9.74391 -9.01438 -8.93530 -8.43213 -8.32533 -7.81606 -5.97752 -4.00497 1.12012 1.66736 3.07050 3.09309 3.36532 3.41807 3.46154 4.24552 4.49629 4.67260 4.87953 5.04832 5.16508 5.26459 5.38239 5.68180 5.88769 6.11085 6.24503 6.69578 6.87441 6.93582 7.12968 7.25526 7.57599 7.69829 7.90234 8.01120 8.18500 8.37176 8.46404 8.99836 9.61691 11.11145 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040296 B = 0.008377 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.683959 B = 3341.794577 C = 3493.714162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.109 3.891 3 H 0.065 0.935 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.165 3.835 13 N -0.243 5.243 14 N -0.518 5.518 15 H 0.436 0.564 16 C 0.070 3.930 17 C -0.107 4.107 18 C -0.134 4.134 19 C 0.065 3.935 20 N -0.407 5.407 21 C 0.035 3.965 22 H 0.037 0.963 23 H 0.011 0.989 24 H 0.075 0.925 25 H 0.262 0.738 26 H 0.130 0.870 27 H 0.137 0.863 28 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.424 -2.161 12.831 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.083 0.917 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.201 1.201 12 C -0.012 4.012 13 N -0.058 5.058 14 N -0.230 5.230 15 H 0.280 0.720 16 C -0.051 4.051 17 C -0.138 4.138 18 C -0.157 4.157 19 C -0.105 4.105 20 N -0.116 5.116 21 C -0.101 4.101 22 H 0.056 0.944 23 H 0.030 0.970 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.540 -2.556 11.649 12.441 hybrid contribution 0.940 -0.992 0.431 1.433 sum 4.480 -3.547 12.081 13.364 Atomic orbital electron populations 1.21709 0.97166 1.00267 0.99169 1.17623 0.92710 0.95736 0.85083 0.91740 1.20959 1.35779 1.07959 0.89695 0.92473 1.24905 0.95198 0.94753 0.98846 1.69939 1.42917 1.15963 1.23793 0.86560 0.78938 0.79716 0.82505 1.20536 1.21232 1.20072 1.23555 0.92186 0.89518 0.95924 1.76950 1.16936 1.15843 0.96075 1.46041 1.45476 1.11125 1.20391 0.72040 1.19748 0.97542 0.90553 0.97252 1.20411 0.99103 0.97956 0.96317 1.21929 1.00008 0.93400 1.00359 1.22614 0.97698 0.99835 0.90307 1.67139 1.05220 1.18727 1.20548 1.19928 1.03478 0.90389 0.96296 0.94421 0.97015 0.90617 0.92842 0.85185 0.84538 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 8.95 37.16 0.33 -2.77 15 2 C 0.11 2.88 2.60 -92.92 -0.24 2.64 15 3 H 0.06 1.84 8.10 -51.93 -0.42 1.42 15 4 C -0.50 -14.36 8.48 -34.44 -0.29 -14.65 15 5 H 0.06 1.65 7.75 -52.49 -0.41 1.25 15 6 C 0.06 1.83 5.29 -17.82 -0.09 1.73 15 7 N -0.89 -25.64 11.98 55.43 0.66 -24.98 15 8 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 15 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 12 C 0.17 3.95 5.68 -82.01 -0.47 3.48 15 13 N -0.24 -5.39 12.57 33.92 0.43 -4.96 15 14 N -0.52 -9.01 7.44 32.38 0.24 -8.77 15 15 H 0.44 5.63 8.96 -182.63 -1.64 4.00 15 16 C 0.07 1.23 7.34 -84.14 -0.62 0.61 15 17 C -0.11 -1.44 10.19 -39.20 -0.40 -1.84 15 18 C -0.13 -1.65 10.09 -39.39 -0.40 -2.05 15 19 C 0.07 0.98 11.16 -17.54 -0.20 0.79 15 20 N -0.41 -8.26 10.41 -11.07 -0.12 -8.38 15 21 C 0.03 0.75 7.23 -84.94 -0.61 0.14 15 22 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 24 H 0.07 1.99 6.84 -51.93 -0.36 1.64 15 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 26 H 0.13 1.26 8.06 -52.49 -0.42 0.84 15 27 H 0.14 1.11 8.06 -52.48 -0.42 0.68 15 28 H 0.16 1.79 8.06 -52.49 -0.42 1.36 15 LS Contribution 250.68 15.07 3.78 3.78 Total: -1.00 -32.10 250.68 -7.08 -39.18 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -4.07 Total: -0.73 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -2.98 Total: -11.91 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.22 Total: -47.09 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.10 -7.08 -39.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198519.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.208 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds