Wall clock time and date at job start Mon Mar 30 2020 03:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46960 * 2 1 4 4 C 1.50697 * 109.46915 * 240.00568 * 2 1 3 5 5 H 1.07999 * 120.00158 * 245.35037 * 4 2 1 6 6 C 1.37881 * 120.00462 * 65.34808 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.14741 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.14791 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 C 1.50697 * 109.47076 * 120.00546 * 2 1 3 13 13 N 1.30145 * 125.62343 * 60.02493 * 12 2 1 14 14 N 1.40043 * 109.75201 * 179.97438 * 13 12 2 15 15 H 0.97007 * 125.98287 * 179.97438 * 14 13 12 16 16 C 1.37046 * 108.02311 * 359.97438 * 14 13 12 17 17 C 1.39407 * 133.99590 * 179.97438 * 16 14 13 18 18 C 1.38081 * 118.23155 * 179.27491 * 17 16 14 19 19 C 1.38922 * 119.58073 * 0.58570 * 18 17 16 20 20 N 1.31277 * 121.42866 * 359.63399 * 19 18 17 21 21 C 1.33372 * 121.50444 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.47153 * 174.96744 * 1 2 3 23 23 H 1.09006 * 109.46784 * 294.96667 * 1 2 3 24 24 H 1.09001 * 109.46961 * 54.96235 * 1 2 3 25 25 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 26 26 H 1.08000 * 120.88389 * 359.97438 * 17 16 14 27 27 H 1.08004 * 120.21401 * 180.19791 * 18 17 16 28 28 H 1.07997 * 119.28238 * 179.60544 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5801 -1.6360 -1.1339 6 6 1.7926 -0.1784 -2.4798 7 7 1.2153 0.9978 -2.5939 8 14 2.2877 -1.1283 -4.0101 9 1 1.2110 -2.0864 -4.3680 10 1 2.5006 -0.1807 -5.1336 11 1 3.5449 -1.8728 -3.7455 12 6 2.0324 -0.7105 1.2304 13 7 1.7867 -1.9496 1.5436 14 7 2.4166 -2.2657 2.7537 15 1 2.3885 -3.1247 3.2036 16 6 3.0796 -1.1488 3.1910 17 6 3.8642 -0.8635 4.3075 18 6 4.4015 0.4033 4.4218 19 6 4.1388 1.3507 3.4402 20 7 3.3939 1.0673 2.3971 21 6 2.8564 -0.1422 2.2325 22 1 -0.3633 -1.0237 -0.0901 23 1 -0.3633 0.4338 0.9317 24 1 -0.3633 0.5900 -0.8414 25 1 1.0463 1.3719 -3.4728 26 1 4.0562 -1.6168 5.0572 27 1 5.0168 0.6581 5.2720 28 1 4.5562 2.3420 3.5377 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260198519.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:13 Heat of formation + Delta-G solvation = 65.960343 kcal Electronic energy + Delta-G solvation = -13941.272721 eV Core-core repulsion = 11571.413913 eV Total energy + Delta-G solvation = -2369.858808 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.59206 -38.94733 -36.46965 -34.12717 -32.65310 -30.90106 -30.43316 -27.22160 -25.03311 -24.24413 -23.67058 -20.50857 -18.87493 -18.56766 -17.93953 -17.01366 -16.64086 -16.15987 -15.37929 -14.81452 -14.61843 -14.14486 -13.68155 -13.52481 -13.36361 -12.98900 -12.78809 -12.49906 -12.29346 -11.95871 -11.67690 -11.50084 -10.98419 -10.49659 -10.25783 -9.78635 -9.22619 -8.13039 -6.23933 -0.11808 0.45630 1.40671 1.42545 1.50832 1.57542 1.78694 2.44260 2.96149 3.16963 3.41110 3.61818 3.84411 3.99754 4.16163 4.51353 4.69728 4.77727 4.84315 5.01813 5.10370 5.16187 5.35689 5.53075 5.70588 5.85806 5.88528 6.22586 6.44058 6.67656 6.80209 7.16558 7.41549 8.95399 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040296 B = 0.008377 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.683959 B = 3341.794577 C = 3493.714162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.112 3.888 3 H 0.028 0.972 4 C -0.523 4.523 5 H 0.044 0.956 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.275 1.275 12 C 0.130 3.870 13 N -0.267 5.267 14 N -0.498 5.498 15 H 0.455 0.545 16 C 0.065 3.935 17 C -0.094 4.094 18 C -0.112 4.112 19 C 0.069 3.931 20 N -0.466 5.466 21 C -0.015 4.015 22 H 0.035 0.965 23 H 0.025 0.975 24 H 0.055 0.945 25 H 0.265 0.735 26 H 0.180 0.820 27 H 0.195 0.805 28 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.166 -2.929 15.227 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.092 3.908 3 H 0.046 0.954 4 C -0.562 4.562 5 H 0.062 0.938 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.784 3.216 9 H -0.197 1.197 10 H -0.202 1.202 11 H -0.200 1.200 12 C -0.046 4.046 13 N -0.084 5.084 14 N -0.215 5.215 15 H 0.303 0.697 16 C -0.056 4.056 17 C -0.124 4.124 18 C -0.134 4.134 19 C -0.102 4.102 20 N -0.176 5.176 21 C -0.148 4.148 22 H 0.054 0.946 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.197 0.803 27 H 0.212 0.788 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 5.266 -3.348 14.046 15.370 hybrid contribution 0.523 -0.680 -0.099 0.864 sum 5.789 -4.028 13.948 15.630 Atomic orbital electron populations 1.21508 0.96700 0.99685 0.98914 1.17273 0.93110 0.94007 0.86443 0.95435 1.21151 1.36101 1.07738 0.91190 0.93803 1.25687 0.95110 0.95582 1.01682 1.70051 1.43539 1.17098 1.24603 0.85565 0.78644 0.78557 0.78847 1.19656 1.20228 1.19963 1.23055 0.94594 0.90645 0.96309 1.76726 1.17997 1.15330 0.98323 1.45881 1.44499 1.12124 1.18957 0.69737 1.20069 0.98253 0.89237 0.98005 1.21073 0.96611 0.99544 0.95181 1.22549 0.98494 0.91863 1.00515 1.23427 0.95504 1.01994 0.89294 1.67074 1.07789 1.19108 1.23589 1.19871 1.05348 0.92258 0.97322 0.94596 0.95613 0.92639 0.92570 0.80303 0.78798 0.79465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.75 8.95 71.98 0.64 -5.11 15 2 C 0.11 6.30 2.60 -12.29 -0.03 6.27 15 3 H 0.03 1.71 8.10 -2.39 -0.02 1.69 15 4 C -0.52 -31.13 8.48 25.60 0.22 -30.91 15 5 H 0.04 2.65 7.75 -2.91 -0.02 2.63 15 6 C 0.02 1.09 5.29 84.65 0.45 1.54 15 7 N -0.91 -54.66 11.98 21.45 0.26 -54.41 15 8 Si 0.96 45.61 29.54 68.60 2.03 47.63 15 9 H -0.27 -12.47 7.11 99.48 0.71 -11.77 15 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 11 H -0.27 -12.91 7.11 99.48 0.71 -12.20 15 12 C 0.13 6.48 5.68 43.65 0.25 6.73 15 13 N -0.27 -12.13 12.57 -46.59 -0.59 -12.71 15 14 N -0.50 -16.83 7.44 -51.48 -0.38 -17.22 15 15 H 0.45 10.87 8.96 -213.35 -1.91 8.95 15 16 C 0.07 2.19 7.34 39.23 0.29 2.47 15 17 C -0.09 -2.06 10.19 22.51 0.23 -1.83 15 18 C -0.11 -2.14 10.09 22.40 0.23 -1.92 15 19 C 0.07 1.88 11.16 84.94 0.95 2.83 15 20 N -0.47 -19.03 10.41 -188.93 -1.97 -21.00 15 21 C -0.02 -0.67 7.23 40.37 0.29 -0.38 15 22 H 0.03 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.02 1.21 8.14 -2.38 -0.02 1.19 15 24 H 0.05 3.07 6.84 -2.39 -0.02 3.05 15 25 H 0.27 14.90 8.31 -92.71 -0.77 14.13 15 26 H 0.18 2.20 8.06 -2.91 -0.02 2.17 15 27 H 0.19 1.56 8.06 -2.91 -0.02 1.54 15 28 H 0.19 3.64 8.06 -2.91 -0.02 3.62 15 Total: -1.00 -75.28 250.68 2.13 -73.15 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -0.73 Total: 4.86 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 3.51 Total: -20.31 kcal Atomic # 7 Polarization: -102.65 SS G_CDS: -2.68 Total: -105.33 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.28 2.13 -73.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260198519.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.111 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds