Wall clock time and date at job start Mon Mar 30 2020 03:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.35089 * 125.66523 * 34.99844 * 12 2 1 14 14 N 1.36733 * 107.16847 * 179.97438 * 13 12 2 15 15 C 1.35929 * 133.55169 * 180.02562 * 14 13 12 16 16 N 1.30416 * 121.06857 * 180.02562 * 15 14 13 17 17 C 1.33650 * 122.00448 * 359.94286 * 16 15 14 18 18 C 1.35969 * 120.47633 * 0.05803 * 17 16 15 19 19 C 1.37519 * 106.88745 * 359.97438 * 14 13 12 20 20 N 1.32082 * 108.10891 * 359.77480 * 19 14 13 21 21 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 23 23 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.07995 * 126.41756 * 359.96650 * 13 12 2 26 26 H 1.08000 * 119.46307 * 359.94581 * 15 14 13 27 27 H 1.07999 * 119.76182 * 180.02562 * 17 16 15 28 28 H 1.07996 * 120.76296 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 6 2.0323 -0.7104 1.2306 13 6 1.4471 -1.7766 1.8185 14 7 2.2146 -2.1135 2.8988 15 6 2.1230 -3.0833 3.8468 16 7 3.0141 -3.1853 4.7936 17 6 4.0543 -2.3506 4.8801 18 6 4.2163 -1.3538 3.9696 19 6 3.2639 -1.2254 2.9359 20 7 3.1342 -0.3939 1.9179 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.7173 1.1669 -3.4844 25 1 0.5425 -2.2703 1.4958 26 1 1.2983 -3.7800 3.8161 27 1 4.7712 -2.4684 5.6793 28 1 5.0549 -0.6765 4.0354 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260206566.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:23 Heat of formation + Delta-G solvation = 94.702763 kcal Electronic energy + Delta-G solvation = -13868.498903 eV Core-core repulsion = 11499.886460 eV Total energy + Delta-G solvation = -2368.612443 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.55418 -38.24603 -34.44555 -33.39144 -31.53830 -30.08250 -27.94024 -25.21296 -24.13234 -22.94868 -22.13206 -19.32251 -18.00630 -16.98759 -16.32285 -15.66208 -15.36364 -14.82158 -14.56711 -13.71021 -12.97814 -12.81023 -12.38839 -12.25520 -11.48470 -11.00049 -10.94583 -10.79202 -10.42020 -10.34433 -10.10749 -9.88089 -9.45215 -9.21404 -8.42107 -8.35864 -7.54149 -6.03528 -4.09768 0.78062 1.57372 2.81642 3.28717 3.36284 3.39892 3.49074 3.90420 4.16897 4.42061 4.48898 4.78193 5.02753 5.27923 5.43199 5.73080 5.84025 5.99592 6.26060 6.56664 6.78328 6.86823 7.02261 7.20687 7.34522 7.65107 7.82312 7.85769 8.04113 8.32139 8.49197 8.91158 9.54285 11.02619 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.049278 B = 0.007356 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.070291 B = 3805.284428 C = 3933.349271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.107 3.893 3 H 0.048 0.952 4 C -0.502 4.502 5 H 0.055 0.945 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.127 3.873 13 C -0.099 4.099 14 N -0.406 5.406 15 C 0.314 3.686 16 N -0.502 5.502 17 C 0.052 3.948 18 C -0.117 4.117 19 C 0.213 3.787 20 N -0.480 5.480 21 H 0.029 0.971 22 H 0.011 0.989 23 H 0.090 0.910 24 H 0.261 0.739 25 H 0.185 0.815 26 H 0.200 0.800 27 H 0.166 0.834 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 -6.146 11.016 12.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.087 3.913 3 H 0.066 0.934 4 C -0.541 4.541 5 H 0.073 0.927 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.004 4.004 13 C -0.228 4.228 14 N -0.088 5.088 15 C 0.032 3.968 16 N -0.216 5.216 17 C -0.089 4.089 18 C -0.140 4.140 19 C -0.031 4.031 20 N -0.201 5.201 21 H 0.048 0.952 22 H 0.030 0.970 23 H 0.109 0.891 24 H 0.071 0.929 25 H 0.202 0.798 26 H 0.216 0.784 27 H 0.183 0.817 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.563 -5.974 11.342 12.914 hybrid contribution -0.084 -0.543 -1.254 1.369 sum 1.479 -6.516 10.088 12.100 Atomic orbital electron populations 1.21808 0.97155 0.99365 1.00766 1.17438 0.92462 0.95726 0.85651 0.93431 1.20974 1.31323 1.12266 0.89529 0.92672 1.24911 0.95040 0.94988 0.98880 1.69882 1.36714 1.22728 1.23466 0.86467 0.78643 0.79660 0.82837 1.19867 1.20949 1.20918 1.22179 0.89071 0.93066 0.96058 1.22627 1.02802 1.05132 0.92253 1.44307 1.21008 1.22839 1.20599 1.24666 0.98221 0.89868 0.84051 1.68043 1.04458 1.27793 1.21325 1.22026 0.95744 0.91919 0.99161 1.21027 0.99107 1.00946 0.92926 1.21196 0.91539 0.91461 0.98941 1.70645 1.19825 1.24964 1.04703 0.95153 0.96979 0.89116 0.92869 0.79772 0.78399 0.81716 0.82987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.54 37.16 0.32 -2.76 15 2 C 0.11 2.73 2.75 -92.92 -0.26 2.47 15 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 15 4 C -0.50 -13.84 8.54 -34.44 -0.29 -14.13 15 5 H 0.05 1.55 7.74 -52.49 -0.41 1.15 15 6 C 0.06 1.73 5.31 -17.82 -0.09 1.64 15 7 N -0.89 -24.94 11.33 55.43 0.63 -24.32 15 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 15 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 12 C 0.13 2.92 5.93 -82.91 -0.49 2.43 15 13 C -0.10 -1.89 10.93 -16.49 -0.18 -2.07 15 14 N -0.41 -7.03 2.95 -63.91 -0.19 -7.22 15 15 C 0.31 4.23 12.21 -89.63 -1.09 3.14 15 16 N -0.50 -6.82 10.36 -14.27 -0.15 -6.97 15 17 C 0.05 0.66 11.16 -17.57 -0.20 0.46 15 18 C -0.12 -1.74 10.16 -39.29 -0.40 -2.14 15 19 C 0.21 4.09 7.87 -155.95 -1.23 2.86 15 20 N -0.48 -11.02 11.30 -8.92 -0.10 -11.12 15 21 H 0.03 0.64 7.24 -51.93 -0.38 0.26 15 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 23 H 0.09 2.31 6.08 -51.93 -0.32 1.99 15 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 25 H 0.19 3.00 7.34 -52.49 -0.39 2.62 15 26 H 0.20 1.80 8.06 -52.49 -0.42 1.38 15 27 H 0.17 1.48 8.06 -52.49 -0.42 1.05 15 28 H 0.15 1.88 8.06 -52.49 -0.42 1.46 15 LS Contribution 247.37 15.07 3.73 3.73 Total: -1.00 -31.34 247.37 -7.75 -39.09 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -2.73 Total: -1.31 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.92 Total: -8.10 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.19 Total: -49.63 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.34 -7.75 -39.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206566.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.796 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds