Wall clock time and date at job start Mon Mar 30 2020 03:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.35089 * 125.66523 * 34.99844 * 12 2 1 14 14 N 1.36733 * 107.16847 * 179.97438 * 13 12 2 15 15 C 1.35929 * 133.55169 * 180.02562 * 14 13 12 16 16 N 1.30416 * 121.06857 * 180.02562 * 15 14 13 17 17 C 1.33650 * 122.00448 * 359.94286 * 16 15 14 18 18 C 1.35969 * 120.47633 * 0.05803 * 17 16 15 19 19 C 1.37519 * 106.88745 * 359.97438 * 14 13 12 20 20 N 1.32082 * 108.10891 * 359.77480 * 19 14 13 21 21 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 23 23 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.07995 * 126.41756 * 359.96650 * 13 12 2 26 26 H 1.08000 * 119.46307 * 359.94581 * 15 14 13 27 27 H 1.07999 * 119.76182 * 180.02562 * 17 16 15 28 28 H 1.07996 * 120.76296 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 3.1574 -2.2796 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1609 -0.1766 -4.8103 12 6 2.0323 -0.7104 1.2306 13 6 1.4471 -1.7766 1.8185 14 7 2.2146 -2.1135 2.8988 15 6 2.1230 -3.0833 3.8468 16 7 3.0141 -3.1853 4.7936 17 6 4.0543 -2.3506 4.8801 18 6 4.2163 -1.3538 3.9696 19 6 3.2639 -1.2254 2.9359 20 7 3.1342 -0.3939 1.9179 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 0.7173 1.1669 -3.4844 25 1 0.5425 -2.2703 1.4958 26 1 1.2983 -3.7800 3.8161 27 1 4.7712 -2.4684 5.6793 28 1 5.0549 -0.6765 4.0354 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260206566.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:22 Heat of formation + Delta-G solvation = 76.397893 kcal Electronic energy + Delta-G solvation = -13869.292662 eV Core-core repulsion = 11499.886460 eV Total energy + Delta-G solvation = -2369.406202 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.91053 -39.51497 -36.30714 -34.72980 -33.28425 -31.58397 -29.36939 -27.25135 -25.48004 -24.28881 -23.69461 -20.99108 -19.30615 -18.46292 -18.04332 -17.05255 -16.78743 -16.39183 -15.90115 -15.08337 -14.78497 -14.59048 -13.79962 -13.47318 -13.34481 -12.86175 -12.74487 -12.29109 -12.22668 -12.14295 -11.88141 -11.32133 -11.16158 -10.95495 -10.47182 -9.91945 -8.90767 -8.11334 -6.25825 -0.34672 0.28085 1.40585 1.42483 1.53254 1.55193 2.01416 2.44846 2.62362 3.12711 3.16270 3.28597 3.57268 3.86721 4.33381 4.46422 4.52713 4.74538 4.80469 4.97002 5.05906 5.17820 5.37124 5.54096 5.68807 5.74409 5.96326 6.09559 6.29014 6.71278 6.79387 6.98378 7.41589 8.93777 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.049278 B = 0.007356 C = 0.007117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.070291 B = 3805.284428 C = 3933.349271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.109 3.891 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.041 0.959 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.282 1.282 12 C 0.082 3.918 13 C -0.086 4.086 14 N -0.409 5.409 15 C 0.323 3.677 16 N -0.506 5.506 17 C 0.082 3.918 18 C -0.144 4.144 19 C 0.206 3.794 20 N -0.538 5.538 21 H 0.048 0.952 22 H 0.027 0.973 23 H 0.064 0.936 24 H 0.264 0.736 25 H 0.212 0.788 26 H 0.246 0.754 27 H 0.210 0.790 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 -8.542 12.646 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.089 3.911 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.060 0.940 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.196 1.196 11 H -0.208 1.208 12 C -0.048 4.048 13 C -0.215 4.215 14 N -0.090 5.090 15 C 0.042 3.958 16 N -0.219 5.219 17 C -0.058 4.058 18 C -0.166 4.166 19 C -0.040 4.040 20 N -0.260 5.260 21 H 0.067 0.933 22 H 0.046 0.954 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.228 0.772 26 H 0.262 0.738 27 H 0.226 0.774 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.615 -8.381 12.983 15.537 hybrid contribution -0.023 0.130 -1.545 1.551 sum 1.593 -8.251 11.437 14.192 Atomic orbital electron populations 1.21599 0.95590 1.00287 1.00143 1.17187 0.93727 0.93246 0.86934 0.98280 1.21158 1.31440 1.12126 0.90994 0.94046 1.25668 0.95155 0.95655 1.01604 1.70004 1.37363 1.23704 1.24221 0.85490 0.78337 0.78420 0.79274 1.19876 1.19588 1.20751 1.21771 0.90882 0.95473 0.96655 1.22689 1.03015 1.03769 0.92048 1.44429 1.20272 1.23411 1.20888 1.25771 0.98948 0.88768 0.82277 1.68225 1.04757 1.27797 1.21078 1.22741 0.95189 0.89473 0.98426 1.21355 0.99504 1.02934 0.92840 1.21720 0.92632 0.90992 0.98685 1.70469 1.20971 1.27653 1.06925 0.93281 0.95426 0.91718 0.92625 0.77161 0.73843 0.77354 0.81291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.54 71.98 0.62 -4.98 15 2 C 0.11 5.82 2.75 -12.28 -0.03 5.78 15 3 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 15 4 C -0.52 -29.60 8.54 25.60 0.22 -29.38 15 5 H 0.04 2.41 7.74 -2.91 -0.02 2.39 15 6 C 0.02 1.02 5.31 84.65 0.45 1.47 15 7 N -0.91 -52.70 11.33 21.45 0.24 -52.46 15 8 Si 0.96 44.13 29.54 68.60 2.03 46.16 15 9 H -0.27 -12.49 7.11 99.48 0.71 -11.79 15 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 15 12 C 0.08 3.87 5.93 41.55 0.25 4.11 15 13 C -0.09 -3.21 10.93 83.20 0.91 -2.30 15 14 N -0.41 -13.38 2.95 -356.10 -1.05 -14.43 15 15 C 0.32 7.43 12.21 180.00 2.20 9.62 15 16 N -0.51 -11.47 10.36 -199.07 -2.06 -13.54 15 17 C 0.08 1.75 11.16 83.89 0.94 2.68 15 18 C -0.14 -3.96 10.16 22.46 0.23 -3.73 15 19 C 0.21 7.79 7.87 134.16 1.06 8.84 15 20 N -0.54 -25.58 11.30 -182.12 -2.06 -27.64 15 21 H 0.05 2.07 7.24 -2.39 -0.02 2.06 15 22 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 23 H 0.06 3.39 6.08 -2.38 -0.01 3.38 15 24 H 0.26 14.34 8.31 -92.71 -0.77 13.57 15 25 H 0.21 6.41 7.34 -2.91 -0.02 6.39 15 26 H 0.25 3.12 8.06 -2.91 -0.02 3.10 15 27 H 0.21 2.55 8.06 -2.91 -0.02 2.52 15 28 H 0.17 3.92 8.06 -2.91 -0.02 3.89 15 Total: -1.00 -71.49 247.37 5.09 -66.41 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.17 Total: 3.36 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 6.82 Total: -7.87 kcal Atomic # 7 Polarization: -103.13 SS G_CDS: -4.93 Total: -108.06 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -71.49 5.09 -66.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206566.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.807 kcal (2) G-P(sol) polarization free energy of solvation -71.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds