Wall clock time and date at job start Mon Mar 30 2020 02:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32190 * 125.92034 * 2 1 4 4 C 1.32938 * 110.00861 * 179.97438 * 3 2 1 5 5 C 1.40577 * 132.87609 * 180.02562 * 4 3 2 6 6 C 1.36530 * 118.55872 * 180.02562 * 5 4 3 7 7 N 1.33429 * 120.48042 * 359.97438 * 6 5 4 8 8 C 1.30642 * 121.83223 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.47634 * 180.02562 * 8 7 6 10 10 N 1.35718 * 121.05032 * 359.97438 * 8 7 6 11 11 C 1.38331 * 133.41024 * 179.97438 * 10 8 7 12 12 C 1.39800 * 126.90286 * 0.02562 * 11 10 8 13 13 H 1.07998 * 119.99829 * 318.79785 * 12 11 10 14 14 C 1.39902 * 120.00299 * 138.79874 * 12 11 10 15 15 N 1.31005 * 119.99896 * 345.47866 * 14 12 11 16 16 Si 1.86803 * 120.00338 * 165.48163 * 14 12 11 17 17 H 1.48499 * 109.47243 * 89.99806 * 16 14 12 18 18 H 1.48504 * 109.47188 * 210.00168 * 16 14 12 19 19 H 1.48501 * 109.46804 * 329.99581 * 16 14 12 20 20 H 1.09004 * 109.46719 * 274.95947 * 1 2 3 21 21 H 1.08998 * 109.47085 * 34.95905 * 1 2 3 22 22 H 1.08995 * 109.46816 * 154.96294 * 1 2 3 23 23 H 1.07999 * 120.72073 * 0.02562 * 5 4 3 24 24 H 1.08002 * 119.75881 * 179.97438 * 6 5 4 25 25 H 1.09001 * 109.47452 * 96.10874 * 9 8 7 26 26 H 1.08995 * 109.47034 * 216.10917 * 9 8 7 27 27 H 1.09003 * 109.46912 * 336.11004 * 9 8 7 28 28 H 0.97000 * 120.00071 * 185.04629 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2826 1.0705 0.0000 4 6 3.5610 0.7061 0.0006 5 6 4.7633 1.4345 0.0013 6 6 5.9430 0.7472 0.0012 7 7 5.9488 -0.5871 0.0010 8 6 4.8419 -1.2810 0.0003 9 6 4.9105 -2.7864 0.0007 10 7 3.6312 -0.6677 0.0004 11 6 2.3291 -1.1345 -0.0006 12 6 1.9162 -2.4702 -0.0016 13 1 2.4294 -3.1936 -0.6178 14 6 0.8382 -2.8697 0.7956 15 7 0.3983 -2.0817 1.7452 16 14 0.0260 -4.5269 0.5062 17 1 0.6996 -5.5596 1.3338 18 1 -1.4081 -4.4480 0.8836 19 1 0.1408 -4.8903 -0.9291 20 1 -0.3633 0.0888 1.0239 21 1 -0.3633 0.8422 -0.5888 22 1 -0.3633 -0.9311 -0.4349 23 1 4.7541 2.5145 0.0019 24 1 6.8782 1.2874 0.0013 25 1 4.8170 -3.1542 1.0225 26 1 4.0981 -3.1873 -0.6054 27 1 5.8660 -3.1067 -0.4148 28 1 -0.3000 -2.3878 2.3449 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260215096.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:01 Heat of formation + Delta-G solvation = 79.303045 kcal Electronic energy + Delta-G solvation = -14440.363186 eV Core-core repulsion = 12071.082961 eV Total energy + Delta-G solvation = -2369.280225 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37685 -37.34152 -34.08512 -33.08385 -31.11772 -29.16750 -28.01533 -27.38577 -24.46400 -21.79921 -21.27161 -19.48799 -17.64369 -16.36331 -16.04641 -15.19546 -14.80714 -14.22710 -13.45889 -13.19050 -12.88200 -12.37218 -12.14395 -11.82613 -11.63471 -11.55182 -11.16962 -11.07631 -10.94042 -10.60169 -10.42935 -9.85092 -9.31550 -9.19781 -8.73753 -7.77651 -6.89348 -6.65541 -4.46920 1.60107 2.44672 2.96680 3.02238 3.05589 3.71308 3.91101 4.08802 4.67057 4.84017 4.92803 5.32081 5.58563 5.84851 6.04154 6.07999 6.18918 6.40491 6.57080 6.67930 6.76469 6.93160 7.02138 7.13308 7.22847 7.41143 7.75100 8.09262 8.20735 8.45476 8.64819 8.87757 9.32092 10.15486 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.035360 B = 0.012100 C = 0.009430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.660654 B = 2313.519187 C = 2968.414476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 C -0.014 4.014 3 N -0.470 5.470 4 C 0.119 3.881 5 C -0.106 4.106 6 C 0.005 3.995 7 N -0.520 5.520 8 C 0.348 3.652 9 C -0.097 4.097 10 N -0.427 5.427 11 C 0.186 3.814 12 C -0.465 4.465 13 H 0.086 0.914 14 C 0.085 3.915 15 N -0.796 5.796 16 Si 0.915 3.085 17 H -0.270 1.270 18 H -0.275 1.275 19 H -0.260 1.260 20 H 0.064 0.936 21 H 0.034 0.966 22 H 0.058 0.942 23 H 0.132 0.868 24 H 0.149 0.851 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -2.308 -1.709 3.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.148 4.148 3 N -0.190 5.190 4 C -0.117 4.117 5 C -0.129 4.129 6 C -0.133 4.133 7 N -0.238 5.238 8 C 0.086 3.914 9 C -0.156 4.156 10 N -0.114 5.114 11 C 0.075 3.925 12 C -0.500 4.500 13 H 0.104 0.896 14 C -0.134 4.134 15 N -0.422 5.422 16 Si 0.739 3.261 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.184 1.184 20 H 0.083 0.917 21 H 0.053 0.947 22 H 0.077 0.923 23 H 0.150 0.850 24 H 0.166 0.834 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.772 -1.621 -1.570 3.574 hybrid contribution -0.724 -0.892 0.107 1.154 sum 2.047 -2.513 -1.463 3.556 Atomic orbital electron populations 1.19657 0.88204 0.99426 1.00917 1.21115 0.95447 0.86882 1.11371 1.69590 0.98498 1.31706 1.19247 1.20124 0.93773 0.80941 1.16867 1.20699 0.89341 1.00043 1.02786 1.21653 0.97004 0.89284 1.05329 1.67862 1.25725 1.09037 1.21140 1.22693 0.79541 0.96142 0.92978 1.20892 1.03876 0.86403 1.04388 1.44335 1.06755 1.09128 1.51153 1.18846 0.78245 0.95333 1.00074 1.18255 1.14197 0.92052 1.25515 0.89645 1.25674 0.95268 0.98934 0.93544 1.69881 1.24031 1.36148 1.12159 0.86186 0.78820 0.81079 0.80005 1.19504 1.19939 1.18419 0.91719 0.94680 0.92324 0.84972 0.83380 0.89667 0.88703 0.90171 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.56 8.63 36.01 0.31 -0.25 15 2 C -0.01 -0.36 6.81 -81.74 -0.56 -0.91 15 3 N -0.47 -12.56 11.22 -8.00 -0.09 -12.65 15 4 C 0.12 3.03 7.83 -155.40 -1.22 1.82 15 5 C -0.11 -2.25 10.16 -39.32 -0.40 -2.65 15 6 C 0.01 0.11 11.18 -17.47 -0.20 -0.09 15 7 N -0.52 -11.00 10.27 -10.36 -0.11 -11.11 15 8 C 0.35 7.70 7.74 -154.68 -1.20 6.51 15 9 C -0.10 -1.75 9.46 36.00 0.34 -1.41 15 10 N -0.43 -10.74 2.99 -57.06 -0.17 -10.91 15 11 C 0.19 4.87 6.29 -83.65 -0.53 4.34 15 12 C -0.46 -11.29 7.84 -38.38 -0.30 -11.60 15 13 H 0.09 1.93 5.77 -52.49 -0.30 1.63 15 14 C 0.08 1.96 4.30 -17.28 -0.07 1.89 15 15 N -0.80 -19.37 10.61 55.55 0.59 -18.78 15 16 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 15 17 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 18 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 19 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 20 H 0.06 1.53 7.42 -51.93 -0.39 1.14 15 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.06 1.33 7.01 -51.93 -0.36 0.97 15 23 H 0.13 2.41 8.06 -52.49 -0.42 1.98 15 24 H 0.15 2.32 8.06 -52.49 -0.42 1.89 15 25 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 26 H 0.09 1.73 5.28 -51.93 -0.27 1.45 15 27 H 0.08 1.22 8.14 -51.93 -0.42 0.79 15 28 H 0.28 6.29 8.31 -40.82 -0.34 5.95 15 LS Contribution 240.57 15.07 3.63 3.63 Total: -1.00 -29.00 240.57 -7.57 -36.57 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -2.57 Total: 3.34 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -3.82 Total: -2.36 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.22 Total: -53.45 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.00 -7.57 -36.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260215096.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.873 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds