Wall clock time and date at job start Mon Mar 30 2020 02:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32190 * 125.92034 * 2 1 4 4 C 1.32938 * 110.00861 * 179.97438 * 3 2 1 5 5 C 1.40577 * 132.87609 * 180.02562 * 4 3 2 6 6 C 1.36530 * 118.55872 * 180.02562 * 5 4 3 7 7 N 1.33429 * 120.48042 * 359.97438 * 6 5 4 8 8 C 1.30642 * 121.83223 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.47634 * 180.02562 * 8 7 6 10 10 N 1.35718 * 121.05032 * 359.97438 * 8 7 6 11 11 C 1.38331 * 133.41024 * 179.97438 * 10 8 7 12 12 C 1.39800 * 126.90286 * 0.02562 * 11 10 8 13 13 H 1.07998 * 119.99829 * 318.79785 * 12 11 10 14 14 C 1.39902 * 120.00299 * 138.79874 * 12 11 10 15 15 N 1.31005 * 119.99896 * 345.47866 * 14 12 11 16 16 Si 1.86803 * 120.00338 * 165.48163 * 14 12 11 17 17 H 1.48499 * 109.47243 * 89.99806 * 16 14 12 18 18 H 1.48504 * 109.47188 * 210.00168 * 16 14 12 19 19 H 1.48501 * 109.46804 * 329.99581 * 16 14 12 20 20 H 1.09004 * 109.46719 * 274.95947 * 1 2 3 21 21 H 1.08998 * 109.47085 * 34.95905 * 1 2 3 22 22 H 1.08995 * 109.46816 * 154.96294 * 1 2 3 23 23 H 1.07999 * 120.72073 * 0.02562 * 5 4 3 24 24 H 1.08002 * 119.75881 * 179.97438 * 6 5 4 25 25 H 1.09001 * 109.47452 * 96.10874 * 9 8 7 26 26 H 1.08995 * 109.47034 * 216.10917 * 9 8 7 27 27 H 1.09003 * 109.46912 * 336.11004 * 9 8 7 28 28 H 0.97000 * 120.00071 * 185.04629 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2826 1.0705 0.0000 4 6 3.5610 0.7061 0.0006 5 6 4.7633 1.4345 0.0013 6 6 5.9430 0.7472 0.0012 7 7 5.9488 -0.5871 0.0010 8 6 4.8419 -1.2810 0.0003 9 6 4.9105 -2.7864 0.0007 10 7 3.6312 -0.6677 0.0004 11 6 2.3291 -1.1345 -0.0006 12 6 1.9162 -2.4702 -0.0016 13 1 2.4294 -3.1936 -0.6178 14 6 0.8382 -2.8697 0.7956 15 7 0.3983 -2.0817 1.7452 16 14 0.0260 -4.5269 0.5062 17 1 0.6996 -5.5596 1.3338 18 1 -1.4081 -4.4480 0.8836 19 1 0.1408 -4.8903 -0.9291 20 1 -0.3633 0.0888 1.0239 21 1 -0.3633 0.8422 -0.5888 22 1 -0.3633 -0.9311 -0.4349 23 1 4.7541 2.5145 0.0019 24 1 6.8782 1.2874 0.0013 25 1 4.8170 -3.1542 1.0225 26 1 4.0981 -3.1873 -0.6054 27 1 5.8660 -3.1067 -0.4148 28 1 -0.3000 -2.3878 2.3449 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260215096.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:01 Heat of formation + Delta-G solvation = 62.884283 kcal Electronic energy + Delta-G solvation = -14441.075157 eV Core-core repulsion = 12071.082961 eV Total energy + Delta-G solvation = -2369.992196 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.17726 -39.07457 -35.85225 -34.80897 -32.88446 -30.94816 -29.62515 -29.21320 -26.20447 -23.58370 -22.98721 -21.33764 -19.40818 -18.16846 -17.73200 -16.95733 -16.50494 -15.82790 -15.11186 -14.84247 -14.57744 -13.94304 -13.82182 -13.52521 -13.33841 -13.25308 -12.82084 -12.78031 -12.55015 -12.25127 -11.99618 -11.61826 -11.03928 -10.91578 -10.62846 -9.58856 -8.66191 -8.45805 -6.31195 -0.09325 0.68348 1.46615 1.49286 1.60941 2.00929 2.23729 2.33585 2.87654 3.10254 3.30200 3.66161 3.91549 4.24339 4.51427 4.61309 4.67643 4.76886 4.93920 4.96870 5.03529 5.13200 5.27699 5.35496 5.44824 5.62346 5.96279 6.29745 6.36798 6.65777 6.84855 7.13895 7.43887 8.43804 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.035360 B = 0.012100 C = 0.009430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.660654 B = 2313.519187 C = 2968.414476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 C -0.055 4.055 3 N -0.502 5.502 4 C 0.102 3.898 5 C -0.129 4.129 6 C 0.028 3.972 7 N -0.522 5.522 8 C 0.333 3.667 9 C -0.092 4.092 10 N -0.438 5.438 11 C 0.161 3.839 12 C -0.481 4.481 13 H 0.097 0.903 14 C 0.049 3.951 15 N -0.829 5.829 16 Si 0.987 3.013 17 H -0.262 1.262 18 H -0.272 1.272 19 H -0.256 1.256 20 H 0.054 0.946 21 H 0.046 0.954 22 H 0.056 0.944 23 H 0.159 0.841 24 H 0.197 0.803 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.671 -3.412 -1.976 5.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.188 4.188 3 N -0.223 5.223 4 C -0.137 4.137 5 C -0.152 4.152 6 C -0.110 4.110 7 N -0.240 5.240 8 C 0.073 3.927 9 C -0.150 4.150 10 N -0.125 5.125 11 C 0.050 3.950 12 C -0.516 4.516 13 H 0.115 0.885 14 C -0.167 4.167 15 N -0.456 5.456 16 Si 0.808 3.192 17 H -0.186 1.186 18 H -0.197 1.197 19 H -0.179 1.179 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.177 0.823 24 H 0.214 0.786 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.130 0.870 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.052 -2.735 -1.839 5.224 hybrid contribution -0.926 -0.476 0.207 1.061 sum 3.127 -3.212 -1.632 4.770 Atomic orbital electron populations 1.19522 0.87135 0.99745 1.00353 1.21549 0.96576 0.87344 1.13312 1.69531 0.99459 1.32296 1.21053 1.20903 0.94619 0.81867 1.16284 1.21089 0.88388 1.01512 1.04213 1.22457 0.98328 0.88923 1.01338 1.68030 1.24959 1.09819 1.21144 1.23600 0.78957 0.98023 0.92151 1.20980 1.05420 0.83794 1.04812 1.44585 1.07433 1.09304 1.51159 1.19222 0.78768 0.96071 1.00962 1.18580 1.15204 0.91708 1.26097 0.88537 1.26538 0.95028 1.02460 0.92648 1.69963 1.24514 1.38113 1.12963 0.85106 0.77651 0.76452 0.80027 1.18634 1.19661 1.17912 0.92785 0.93524 0.92465 0.82344 0.78645 0.89167 0.89147 0.87024 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.46 8.63 71.24 0.61 0.15 15 2 C -0.06 -3.00 6.81 42.96 0.29 -2.71 15 3 N -0.50 -27.53 11.22 -179.24 -2.01 -29.54 15 4 C 0.10 5.20 7.83 133.74 1.05 6.25 15 5 C -0.13 -5.30 10.16 22.44 0.23 -5.07 15 6 C 0.03 1.00 11.18 84.05 0.94 1.94 15 7 N -0.52 -20.72 10.27 -186.68 -1.92 -22.64 15 8 C 0.33 14.32 7.74 137.87 1.07 15.39 15 9 C -0.09 -3.15 9.46 71.24 0.67 -2.47 15 10 N -0.44 -22.07 2.99 -334.44 -1.00 -23.07 15 11 C 0.16 8.53 6.29 38.95 0.25 8.77 15 12 C -0.48 -23.43 7.84 23.05 0.18 -23.25 15 13 H 0.10 4.32 5.77 -2.91 -0.02 4.31 15 14 C 0.05 2.27 4.30 85.22 0.37 2.63 15 15 N -0.83 -40.78 10.61 21.83 0.23 -40.54 15 16 Si 0.99 34.73 29.59 68.60 2.03 36.76 15 17 H -0.26 -8.82 7.11 99.48 0.71 -8.12 15 18 H -0.27 -9.38 7.11 99.48 0.71 -8.67 15 19 H -0.26 -8.72 7.11 99.48 0.71 -8.02 15 20 H 0.05 2.64 7.42 -2.39 -0.02 2.63 15 21 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.06 2.67 7.01 -2.39 -0.02 2.65 15 23 H 0.16 5.47 8.06 -2.91 -0.02 5.44 15 24 H 0.20 5.12 8.06 -2.91 -0.02 5.10 15 25 H 0.09 3.00 8.14 -2.39 -0.02 2.98 15 26 H 0.09 3.18 5.28 -2.39 -0.01 3.17 15 27 H 0.11 3.05 8.14 -2.39 -0.02 3.03 15 28 H 0.29 12.93 8.31 -92.71 -0.77 12.16 15 Total: -1.00 -62.90 240.57 4.17 -58.73 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.18 Total: 18.67 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.66 Total: 1.64 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -4.70 Total: -115.79 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Total: -62.90 4.17 -58.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260215096.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.609 kcal (2) G-P(sol) polarization free energy of solvation -62.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds