Wall clock time and date at job start Mon Mar 30 2020 02:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35090 * 126.42078 * 2 1 4 4 C 1.50696 * 125.66007 * 0.02562 * 3 2 1 5 5 C 1.50704 * 109.47077 * 90.00384 * 4 3 2 6 6 H 1.07996 * 119.99869 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99788 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99601 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00269 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46800 * 90.00247 * 9 7 5 11 11 H 1.48500 * 109.47040 * 210.00217 * 9 7 5 12 12 H 1.48497 * 109.47075 * 330.00030 * 9 7 5 13 13 N 1.33680 * 108.67158 * 179.97438 * 3 2 1 14 14 C 1.32083 * 109.15939 * 0.05653 * 13 3 2 15 15 C 1.41143 * 133.46946 * 179.97438 * 14 13 3 16 16 C 1.35973 * 118.47078 * 180.02562 * 15 14 13 17 17 N 1.33643 * 120.48059 * 359.97245 * 16 15 14 18 18 C 1.30424 * 122.00084 * 0.02562 * 17 16 15 19 19 N 1.35938 * 121.06799 * 359.97438 * 18 17 16 20 20 H 1.08997 * 109.46557 * 270.00141 * 1 2 3 21 21 H 1.09000 * 109.46912 * 29.99732 * 1 2 3 22 22 H 1.08993 * 109.47570 * 149.99613 * 1 2 3 23 23 H 1.09003 * 109.46860 * 209.99739 * 4 3 2 24 24 H 1.08999 * 109.47793 * 329.99925 * 4 3 2 25 25 H 0.96991 * 119.99630 * 179.97438 * 8 7 5 26 26 H 1.07992 * 120.76690 * 0.04130 * 15 14 13 27 27 H 1.08007 * 119.76058 * 180.02562 * 16 15 14 28 28 H 1.07998 * 119.46550 * 179.72061 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3091 1.0870 0.0000 4 6 1.8454 2.5209 0.0005 5 6 1.6915 2.9985 1.4216 6 1 1.9073 2.3304 2.2422 7 6 1.2750 4.2884 1.6740 8 7 1.1402 4.7051 2.9141 9 14 0.9023 5.4443 0.2546 10 1 -0.5288 5.3204 -0.1217 11 1 1.1866 6.8422 0.6670 12 1 1.7529 5.0889 -0.9096 13 7 3.5822 0.6795 0.0006 14 6 3.6147 -0.6409 -0.0003 15 6 4.6627 -1.5864 -0.0007 16 6 4.3432 -2.9081 -0.0022 17 7 3.0644 -3.2964 -0.0027 18 6 2.0817 -2.4389 -0.0023 19 7 2.3187 -1.1004 -0.0008 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 2.5803 3.1406 -0.5134 24 1 0.8866 2.5930 -0.5129 25 1 0.8476 5.6126 3.0917 26 1 5.6944 -1.2676 0.0004 27 1 5.1286 -3.6495 -0.0021 28 1 1.0632 -2.7981 -0.0073 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260237900.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:40 Heat of formation + Delta-G solvation = 92.138335 kcal Electronic energy + Delta-G solvation = -13878.475457 eV Core-core repulsion = 11509.751812 eV Total energy + Delta-G solvation = -2368.723645 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.67147 -38.31173 -33.85109 -33.41955 -31.79372 -30.58408 -28.92328 -26.38155 -24.11028 -22.83828 -22.01653 -19.61699 -17.63721 -17.09824 -16.87478 -15.86395 -15.37585 -14.89960 -14.23509 -13.51965 -13.15538 -12.92814 -12.33249 -12.26561 -12.19631 -11.99309 -11.64981 -10.96146 -10.65356 -10.61353 -10.16305 -10.05017 -9.54867 -9.40469 -8.58533 -8.49500 -7.44385 -6.07476 -4.06572 0.73863 1.49719 2.71405 3.27990 3.34278 3.37125 3.40561 3.84028 4.12646 4.41141 4.41938 4.71491 4.89701 5.24536 5.36775 5.42596 5.57215 5.74941 5.88931 5.92402 6.20866 6.30425 6.57100 6.85155 6.97393 7.18161 7.28640 7.65714 7.80795 8.35928 8.48528 8.96363 9.51405 11.05665 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.051673 B = 0.007628 C = 0.007284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.738603 B = 3669.604946 C = 3843.248219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.068 4.068 3 C 0.127 3.873 4 C 0.054 3.946 5 C -0.508 4.508 6 H 0.071 0.929 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.263 1.263 13 N -0.475 5.475 14 C 0.215 3.785 15 C -0.115 4.115 16 C 0.052 3.948 17 N -0.500 5.500 18 C 0.314 3.686 19 N -0.403 5.403 20 H 0.076 0.924 21 H 0.088 0.912 22 H 0.055 0.945 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.265 0.735 26 H 0.154 0.846 27 H 0.167 0.833 28 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -12.862 -7.511 14.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.180 4.180 3 C -0.004 4.004 4 C 0.016 3.984 5 C -0.547 4.547 6 H 0.089 0.911 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.188 1.188 13 N -0.195 5.195 14 C -0.029 4.029 15 C -0.138 4.138 16 C -0.088 4.088 17 N -0.213 5.213 18 C 0.032 3.968 19 N -0.085 5.085 20 H 0.095 0.905 21 H 0.106 0.894 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.171 0.829 27 H 0.184 0.816 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.025 -13.064 -7.400 15.049 hybrid contribution -0.565 0.942 -0.457 1.189 sum 0.460 -12.122 -7.857 14.453 Atomic orbital electron populations 1.20135 0.86190 1.02666 1.03157 1.21113 0.94832 0.84159 1.17865 1.21423 0.86799 0.97014 0.95148 1.18292 0.96032 0.84896 0.99188 1.20789 1.45632 0.98181 0.90058 0.91056 1.24939 0.94868 0.97686 0.95562 1.69893 1.47215 1.17956 1.18712 0.86825 0.79117 0.80473 0.83284 1.20048 1.21144 1.18768 1.70606 1.22367 1.05350 1.21189 1.21065 0.83775 0.91562 1.06524 1.21033 0.98771 0.91160 1.02804 1.22041 0.92776 0.94324 0.99707 1.68056 1.00552 1.34735 1.17996 1.24626 1.00458 0.77475 0.94199 1.44133 1.10090 1.06904 1.47352 0.90533 0.89359 0.92651 0.94327 0.94852 0.92547 0.82867 0.81610 0.78510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.12 36.01 0.36 -0.58 15 2 C -0.07 -1.29 7.05 -81.53 -0.57 -1.87 15 3 C 0.13 2.88 6.25 -82.91 -0.52 2.37 15 4 C 0.05 1.32 4.37 -29.04 -0.13 1.19 15 5 C -0.51 -14.52 9.65 -34.44 -0.33 -14.85 15 6 H 0.07 2.27 7.98 -52.49 -0.42 1.85 15 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 8 N -0.90 -27.46 13.96 55.43 0.77 -26.69 15 9 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 15 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 12 H -0.26 -6.11 6.54 56.52 0.37 -5.74 15 13 N -0.47 -10.81 11.30 -8.92 -0.10 -10.91 15 14 C 0.22 4.11 7.87 -155.96 -1.23 2.89 15 15 C -0.11 -1.69 10.16 -39.29 -0.40 -2.09 15 16 C 0.05 0.66 11.16 -17.58 -0.20 0.46 15 17 N -0.50 -6.77 10.36 -14.27 -0.15 -6.92 15 18 C 0.31 4.27 12.14 -89.62 -1.09 3.18 15 19 N -0.40 -6.98 2.95 -59.70 -0.18 -7.16 15 20 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 21 H 0.09 1.31 7.13 -51.93 -0.37 0.94 15 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.04 0.97 7.20 -51.93 -0.37 0.60 15 24 H 0.03 0.75 6.56 -51.93 -0.34 0.41 15 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 26 H 0.15 1.88 8.06 -52.49 -0.42 1.46 15 27 H 0.17 1.47 8.06 -52.48 -0.42 1.04 15 28 H 0.20 1.85 8.06 -52.49 -0.42 1.43 15 LS Contribution 248.66 15.07 3.75 3.75 Total: -1.00 -33.66 248.66 -7.55 -41.21 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -2.78 Total: -2.33 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -4.19 Total: -7.36 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.35 Total: -51.67 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.66 -7.55 -41.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260237900.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.352 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds