Wall clock time and date at job start Mon Mar 30 2020 02:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35090 * 126.42078 * 2 1 4 4 C 1.50696 * 125.66007 * 0.02562 * 3 2 1 5 5 C 1.50704 * 109.47077 * 90.00384 * 4 3 2 6 6 H 1.07996 * 119.99869 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99788 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99601 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00269 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46800 * 90.00247 * 9 7 5 11 11 H 1.48500 * 109.47040 * 210.00217 * 9 7 5 12 12 H 1.48497 * 109.47075 * 330.00030 * 9 7 5 13 13 N 1.33680 * 108.67158 * 179.97438 * 3 2 1 14 14 C 1.32083 * 109.15939 * 0.05653 * 13 3 2 15 15 C 1.41143 * 133.46946 * 179.97438 * 14 13 3 16 16 C 1.35973 * 118.47078 * 180.02562 * 15 14 13 17 17 N 1.33643 * 120.48059 * 359.97245 * 16 15 14 18 18 C 1.30424 * 122.00084 * 0.02562 * 17 16 15 19 19 N 1.35938 * 121.06799 * 359.97438 * 18 17 16 20 20 H 1.08997 * 109.46557 * 270.00141 * 1 2 3 21 21 H 1.09000 * 109.46912 * 29.99732 * 1 2 3 22 22 H 1.08993 * 109.47570 * 149.99613 * 1 2 3 23 23 H 1.09003 * 109.46860 * 209.99739 * 4 3 2 24 24 H 1.08999 * 109.47793 * 329.99925 * 4 3 2 25 25 H 0.96991 * 119.99630 * 179.97438 * 8 7 5 26 26 H 1.07992 * 120.76690 * 0.04130 * 15 14 13 27 27 H 1.08007 * 119.76058 * 180.02562 * 16 15 14 28 28 H 1.07998 * 119.46550 * 179.72061 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3091 1.0870 0.0000 4 6 1.8454 2.5209 0.0005 5 6 1.6915 2.9985 1.4216 6 1 1.9073 2.3304 2.2422 7 6 1.2750 4.2884 1.6740 8 7 1.1402 4.7051 2.9141 9 14 0.9023 5.4443 0.2546 10 1 -0.5288 5.3204 -0.1217 11 1 1.1866 6.8422 0.6670 12 1 1.7529 5.0889 -0.9096 13 7 3.5822 0.6795 0.0006 14 6 3.6147 -0.6409 -0.0003 15 6 4.6627 -1.5864 -0.0007 16 6 4.3432 -2.9081 -0.0022 17 7 3.0644 -3.2964 -0.0027 18 6 2.0817 -2.4389 -0.0023 19 7 2.3187 -1.1004 -0.0008 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 2.5803 3.1406 -0.5134 24 1 0.8866 2.5930 -0.5129 25 1 0.8476 5.6126 3.0917 26 1 5.6944 -1.2676 0.0004 27 1 5.1286 -3.6495 -0.0021 28 1 1.0632 -2.7981 -0.0073 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260237900.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:40 Heat of formation + Delta-G solvation = 70.553876 kcal Electronic energy + Delta-G solvation = -13879.411429 eV Core-core repulsion = 11509.751812 eV Total energy + Delta-G solvation = -2369.659617 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.00646 -39.54598 -35.48835 -35.03028 -33.51937 -31.77792 -30.69178 -27.62394 -25.78312 -24.23471 -23.46369 -21.16083 -19.02845 -18.89587 -18.30962 -17.24683 -16.61836 -16.26100 -15.94619 -15.02283 -14.68278 -14.35392 -14.01473 -13.69876 -13.50975 -13.27040 -13.19407 -12.61328 -12.42808 -12.15959 -11.91620 -11.65609 -11.30676 -10.99426 -10.77171 -9.95650 -8.78903 -8.29266 -6.35005 -0.39166 0.21705 1.38152 1.42071 1.45707 1.54243 1.90933 2.37280 2.57241 3.03308 3.10348 3.23525 3.50753 3.75752 4.16653 4.29741 4.34715 4.52755 4.68636 4.74514 4.97995 4.99783 5.08349 5.28548 5.36011 5.49909 5.65695 5.91974 6.24738 6.67503 6.67733 6.89563 7.27407 8.87845 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.051673 B = 0.007628 C = 0.007284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.738603 B = 3669.604946 C = 3843.248219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.060 4.060 3 C 0.072 3.928 4 C 0.065 3.935 5 C -0.515 4.515 6 H 0.017 0.983 7 C 0.011 3.989 8 N -0.949 5.949 9 Si 0.953 3.047 10 H -0.251 1.251 11 H -0.284 1.284 12 H -0.251 1.251 13 N -0.531 5.531 14 C 0.204 3.796 15 C -0.141 4.141 16 C 0.081 3.919 17 N -0.502 5.502 18 C 0.321 3.679 19 N -0.408 5.408 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.101 0.899 23 H 0.024 0.976 24 H 0.056 0.944 25 H 0.269 0.731 26 H 0.171 0.829 27 H 0.211 0.789 28 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -15.002 -9.381 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.172 4.172 3 C -0.058 4.058 4 C 0.026 3.974 5 C -0.553 4.553 6 H 0.035 0.965 7 C -0.186 4.186 8 N -0.590 5.590 9 Si 0.775 3.225 10 H -0.175 1.175 11 H -0.210 1.210 12 H -0.175 1.175 13 N -0.253 5.253 14 C -0.042 4.042 15 C -0.163 4.163 16 C -0.060 4.060 17 N -0.215 5.215 18 C 0.040 3.960 19 N -0.089 5.089 20 H 0.090 0.910 21 H 0.104 0.896 22 H 0.120 0.880 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.188 0.812 27 H 0.228 0.772 28 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 0.212 -15.232 -9.277 17.836 hybrid contribution -0.218 1.340 0.209 1.374 sum -0.007 -13.892 -9.068 16.589 Atomic orbital electron populations 1.20277 0.83403 1.04873 1.03479 1.21430 0.96261 0.83660 1.15803 1.21244 0.88023 0.97159 0.99371 1.18034 0.96648 0.86504 0.96176 1.20929 1.45467 0.97816 0.91067 0.96450 1.25948 0.94382 0.99530 0.98735 1.70057 1.48654 1.18767 1.21487 0.85626 0.80254 0.77279 0.79359 1.17500 1.20962 1.17495 1.70422 1.23083 1.07912 1.23849 1.21619 0.85701 0.91151 1.05771 1.21368 0.98809 0.91315 1.04847 1.22754 0.93488 0.94211 0.95529 1.68229 1.01002 1.34331 1.17963 1.25694 1.02570 0.75791 0.91914 1.44279 1.09194 1.07974 1.47449 0.90976 0.89569 0.88050 0.95728 0.92617 0.92225 0.81170 0.77240 0.74099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.12 71.24 0.72 -1.01 15 2 C -0.06 -2.23 7.05 41.07 0.29 -1.94 15 3 C 0.07 3.35 6.25 41.55 0.26 3.61 15 4 C 0.06 3.24 4.37 29.10 0.13 3.37 15 5 C -0.51 -30.85 9.65 25.60 0.25 -30.60 15 6 H 0.02 1.18 7.98 -2.91 -0.02 1.15 15 7 C 0.01 0.66 5.47 84.65 0.46 1.12 15 8 N -0.95 -60.14 13.96 21.45 0.30 -59.84 15 9 Si 0.95 43.85 27.47 68.60 1.88 45.73 15 10 H -0.25 -10.55 7.11 99.48 0.71 -9.85 15 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 12 H -0.25 -10.99 6.54 99.48 0.65 -10.34 15 13 N -0.53 -25.16 11.30 -182.13 -2.06 -27.22 15 14 C 0.20 7.77 7.87 134.16 1.06 8.82 15 15 C -0.14 -3.92 10.16 22.46 0.23 -3.69 15 16 C 0.08 1.73 11.16 83.89 0.94 2.67 15 17 N -0.50 -11.56 10.36 -199.06 -2.06 -13.62 15 18 C 0.32 7.55 12.14 180.00 2.18 9.73 15 19 N -0.41 -13.53 2.95 -342.78 -1.01 -14.54 15 20 H 0.07 2.06 8.14 -2.39 -0.02 2.05 15 21 H 0.09 2.41 7.13 -2.39 -0.02 2.39 15 22 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 23 H 0.02 1.27 7.20 -2.39 -0.02 1.25 15 24 H 0.06 2.49 6.56 -2.39 -0.02 2.47 15 25 H 0.27 15.74 8.31 -92.72 -0.77 14.97 15 26 H 0.17 3.97 8.06 -2.91 -0.02 3.95 15 27 H 0.21 2.59 8.06 -2.91 -0.02 2.57 15 28 H 0.24 3.26 8.06 -2.91 -0.02 3.24 15 Total: -1.00 -78.62 248.66 4.68 -73.95 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.11 Total: 3.45 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 6.51 Total: -7.92 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -4.83 Total: -115.22 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -78.62 4.68 -73.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260237900.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.503 kcal (2) G-P(sol) polarization free energy of solvation -78.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds