Wall clock time and date at job start Mon Mar 30 2020 02:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33634 * 125.68178 * 2 1 4 4 C 1.32520 * 109.25596 * 180.02562 * 3 2 1 5 5 N 1.34089 * 131.94573 * 179.97438 * 4 3 2 6 6 C 1.31225 * 120.91673 * 179.97438 * 5 4 3 7 7 C 1.40205 * 120.38128 * 0.02562 * 6 5 4 8 8 C 1.35568 * 119.32439 * 359.97438 * 7 6 5 9 9 N 1.36455 * 119.07755 * 0.02562 * 8 7 6 10 10 C 1.34996 * 125.69107 * 180.02562 * 2 1 3 11 11 C 1.50701 * 126.45009 * 359.92713 * 10 2 1 12 12 C 1.50705 * 109.47166 * 270.04179 * 11 10 2 13 13 H 1.08002 * 119.99822 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00263 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99749 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00162 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47295 * 60.00278 * 16 14 12 18 18 H 1.48506 * 109.47444 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47269 * 299.99879 * 16 14 12 20 20 H 1.09004 * 109.47179 * 269.95255 * 1 2 3 21 21 H 1.08992 * 109.47660 * 29.95719 * 1 2 3 22 22 H 1.09005 * 109.47099 * 149.96084 * 1 2 3 23 23 H 1.08002 * 119.80957 * 180.28288 * 6 5 4 24 24 H 1.08000 * 120.33642 * 180.02562 * 7 6 5 25 25 H 1.08002 * 120.46329 * 179.97438 * 8 7 6 26 26 H 1.08994 * 109.47387 * 30.04007 * 11 10 2 27 27 H 1.08998 * 109.47302 * 150.04577 * 11 10 2 28 28 H 0.96998 * 119.99603 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2865 1.0855 0.0000 4 6 3.5576 0.7107 -0.0006 5 7 4.6993 1.4139 -0.0012 6 6 5.8638 0.8089 -0.0012 7 6 5.9353 -0.5913 -0.0010 8 6 4.7888 -1.3148 -0.0003 9 7 3.5916 -0.6601 -0.0004 10 6 2.2946 -1.0964 -0.0005 11 6 1.8324 -2.5308 0.0004 12 6 1.6789 -3.0082 1.4216 13 1 1.8948 -2.3399 2.2420 14 6 1.2638 -4.2984 1.6744 15 7 1.0013 -5.1124 0.6752 16 14 1.0727 -4.8899 3.4358 17 1 0.0698 -4.0470 4.1351 18 1 0.6174 -6.3035 3.4368 19 1 2.3784 -4.7895 4.1361 20 1 -0.3634 -0.0009 1.0277 21 1 -0.3634 0.8903 -0.5131 22 1 -0.3633 -0.8897 -0.5145 23 1 6.7722 1.3929 0.0029 24 1 6.8941 -1.0885 -0.0005 25 1 4.8225 -2.3942 -0.0005 26 1 0.8738 -2.6040 -0.5130 27 1 2.5679 -3.1499 -0.5133 28 1 0.7089 -6.0200 0.8531 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260238871.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:46 Heat of formation + Delta-G solvation = 90.152927 kcal Electronic energy + Delta-G solvation = -14007.687846 eV Core-core repulsion = 11638.878107 eV Total energy + Delta-G solvation = -2368.809739 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.43407 -37.91100 -34.28118 -33.35457 -31.53121 -30.41874 -28.13535 -26.56485 -23.94301 -22.92333 -21.84917 -19.73625 -17.43131 -17.02458 -16.61512 -15.62530 -15.53401 -14.65952 -14.07057 -12.95030 -12.86996 -12.72692 -12.56730 -12.34831 -11.78096 -11.65885 -11.44038 -11.06637 -10.98653 -10.81264 -10.33708 -9.70560 -9.61397 -9.30700 -8.59525 -8.48559 -7.24904 -6.20733 -4.27912 0.96566 1.55752 2.98155 3.21696 3.26580 3.27985 3.37868 4.00953 4.05536 4.30579 4.79984 4.89625 5.11692 5.14966 5.44444 5.73803 5.81156 5.99003 6.11560 6.27221 6.30834 6.51656 6.67560 7.11538 7.13806 7.32365 7.38076 7.72380 8.02951 8.10718 8.49196 8.75698 9.37841 10.87058 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.031931 B = 0.009446 C = 0.008117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.685836 B = 2963.453136 C = 3448.598570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.044 3.956 3 N -0.471 5.471 4 C 0.344 3.656 5 N -0.441 5.441 6 C 0.151 3.849 7 C -0.231 4.231 8 C 0.134 3.866 9 N -0.397 5.397 10 C 0.009 3.991 11 C 0.089 3.911 12 C -0.520 4.520 13 H 0.055 0.945 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.277 1.277 20 H 0.073 0.927 21 H 0.064 0.936 22 H 0.078 0.922 23 H 0.173 0.827 24 H 0.156 0.844 25 H 0.173 0.827 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 4.759 -1.786 8.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.087 4.087 3 N -0.195 5.195 4 C -0.003 4.003 5 N -0.153 5.153 6 C -0.037 4.037 7 C -0.255 4.255 8 C 0.001 3.999 9 N -0.075 5.075 10 C -0.105 4.105 11 C 0.051 3.949 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.725 3.275 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.202 1.202 20 H 0.091 0.909 21 H 0.083 0.917 22 H 0.097 0.903 23 H 0.190 0.810 24 H 0.174 0.826 25 H 0.190 0.810 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.418 6.293 -1.834 9.174 hybrid contribution 0.483 -2.139 1.033 2.424 sum 6.901 4.154 -0.802 8.094 Atomic orbital electron populations 1.20053 0.86632 1.02397 1.02752 1.20685 0.96816 0.86932 1.04227 1.70428 0.96750 1.29393 1.22933 1.21648 0.93267 0.77157 1.08195 1.67735 0.95841 1.36796 1.14941 1.23046 0.94914 0.92183 0.93510 1.21600 0.98457 0.95513 1.09933 1.22230 0.83040 1.00265 0.94314 1.43797 1.06598 1.10312 1.46770 1.22257 0.79606 1.00465 1.08126 1.17887 0.97263 0.81424 0.98342 1.20961 1.46670 0.97117 0.91103 0.92629 1.24967 0.94894 0.96494 0.97490 1.69927 1.45179 1.06898 1.30894 0.86562 0.78750 0.77796 0.84438 1.19920 1.21025 1.20232 0.90880 0.91736 0.90319 0.81005 0.82614 0.80968 0.93052 0.95573 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.21 36.01 0.37 -0.74 15 2 C 0.04 0.97 7.06 -82.96 -0.59 0.38 15 3 N -0.47 -10.80 11.31 -10.66 -0.12 -10.92 15 4 C 0.34 7.44 8.92 -322.53 -2.88 4.57 15 5 N -0.44 -8.27 10.48 -13.70 -0.14 -8.41 15 6 C 0.15 2.06 11.27 -17.07 -0.19 1.87 15 7 C -0.23 -2.93 10.06 -39.80 -0.40 -3.33 15 8 C 0.13 2.21 10.98 -16.45 -0.18 2.03 15 9 N -0.40 -8.24 2.95 -60.19 -0.18 -8.42 15 10 C 0.01 0.20 6.23 -81.51 -0.51 -0.31 15 11 C 0.09 2.17 5.19 -29.03 -0.15 2.01 15 12 C -0.52 -13.83 9.09 -34.44 -0.31 -14.14 15 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 15 N -0.89 -24.68 13.29 55.43 0.74 -23.94 15 16 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 15 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 20 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.08 1.39 7.13 -51.93 -0.37 1.02 15 23 H 0.17 1.51 8.06 -52.49 -0.42 1.08 15 24 H 0.16 1.29 8.06 -52.49 -0.42 0.86 15 25 H 0.17 2.59 8.06 -52.49 -0.42 2.16 15 26 H 0.05 1.29 7.14 -51.93 -0.37 0.92 15 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 LS Contribution 252.26 15.07 3.80 3.80 Total: -1.00 -31.95 252.26 -8.68 -40.63 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -2.82 Total: -2.31 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -4.94 Total: -6.05 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: 0.29 Total: -51.70 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.95 -8.68 -40.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238871.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.780 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds