Wall clock time and date at job start Mon Mar 30 2020 02:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30798 * 126.25238 * 2 1 4 4 N 1.28686 * 110.29547 * 179.97438 * 3 2 1 5 5 C 1.32305 * 109.48166 * 0.02562 * 4 3 2 6 6 C 1.40815 * 133.46615 * 180.02562 * 5 4 3 7 7 C 1.36025 * 119.22400 * 179.97438 * 6 5 4 8 8 C 1.50698 * 120.12262 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47105 * 90.00215 * 8 7 6 10 10 H 1.08002 * 120.00000 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99959 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99793 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00132 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47319 * 90.00054 * 13 11 9 15 15 H 1.48499 * 109.47475 * 210.00175 * 13 11 9 16 16 H 1.48504 * 109.47203 * 330.00338 * 13 11 9 17 17 C 1.40539 * 119.74790 * 0.02562 * 7 6 5 18 18 C 1.34954 * 120.36843 * 359.97438 * 17 7 6 19 19 N 1.36063 * 126.24392 * 179.97438 * 2 1 3 20 20 H 1.08996 * 109.47412 * 270.00830 * 1 2 3 21 21 H 1.09006 * 109.46592 * 30.00048 * 1 2 3 22 22 H 1.08995 * 109.47206 * 150.00081 * 1 2 3 23 23 H 1.07996 * 120.38429 * 0.19915 * 6 5 4 24 24 H 1.09004 * 109.47166 * 210.00271 * 8 7 6 25 25 H 1.08997 * 109.47388 * 330.00189 * 8 7 6 26 26 H 0.97002 * 120.00210 * 179.97438 * 12 11 9 27 27 H 1.08004 * 119.81762 * 180.02562 * 17 7 6 28 28 H 1.08003 * 119.74400 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0548 0.0000 4 7 3.5177 0.7010 0.0005 5 6 3.5991 -0.6195 0.0004 6 6 4.6787 -1.5236 0.0012 7 6 4.4257 -2.8601 0.0012 8 6 5.5658 -3.8456 0.0015 9 6 5.9455 -4.1740 1.4224 10 1 5.4147 -3.7147 2.2432 11 6 6.9707 -5.0609 1.6746 12 7 7.3023 -5.3471 2.9146 13 14 7.8884 -5.8559 0.2551 14 1 9.0477 -5.0078 -0.1218 15 1 8.3706 -7.1986 0.6673 16 1 6.9765 -5.9932 -0.9089 17 6 3.0972 -3.3184 -0.0001 18 6 2.0725 -2.4401 -0.0009 19 7 2.3114 -1.0974 0.0005 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8901 -0.5139 22 1 -0.3633 -0.8899 -0.5138 23 1 5.6956 -1.1600 0.0054 24 1 5.2588 -4.7566 -0.5124 25 1 6.4228 -3.4100 -0.5121 26 1 8.0233 -5.9713 3.0921 27 1 2.8950 -4.3793 0.0003 28 1 1.0554 -2.8034 -0.0023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260245196.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:42 Heat of formation + Delta-G solvation = 95.492059 kcal Electronic energy + Delta-G solvation = -13703.706047 eV Core-core repulsion = 11335.127831 eV Total energy + Delta-G solvation = -2368.578217 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.17684 -38.09824 -34.62632 -33.00419 -31.81407 -30.39313 -28.95081 -26.79209 -24.00420 -23.29123 -21.22522 -20.85882 -17.61153 -16.96847 -16.61164 -16.30852 -15.10102 -14.62805 -14.28985 -13.71044 -13.24829 -12.85831 -12.66718 -12.29137 -12.18121 -11.95621 -11.56896 -11.37747 -10.89333 -10.66238 -10.33136 -10.18219 -9.92488 -9.52868 -9.06325 -8.72405 -7.56563 -6.21167 -4.23224 1.02424 1.48241 2.59053 2.96966 3.19932 3.28058 3.28577 3.77489 4.28646 4.30480 4.55989 4.83523 4.85980 5.05802 5.13268 5.33462 5.42545 5.51021 5.64782 5.93409 6.05706 6.33915 6.34740 6.50117 6.70510 6.84749 7.13788 7.20281 7.48919 8.30937 8.81697 8.84958 9.36948 10.91275 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.057572 B = 0.006797 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.232974 B = 4118.584001 C = 4232.166752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.115 3.885 3 N -0.257 5.257 4 N -0.310 5.310 5 C 0.213 3.787 6 C -0.106 4.106 7 C 0.000 4.000 8 C 0.017 3.983 9 C -0.522 4.522 10 H 0.075 0.925 11 C 0.073 3.927 12 N -0.894 5.894 13 Si 0.878 3.122 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.264 1.264 17 C -0.109 4.109 18 C 0.040 3.960 19 N -0.390 5.390 20 H 0.081 0.919 21 H 0.092 0.908 22 H 0.073 0.927 23 H 0.154 0.846 24 H 0.036 0.964 25 H 0.033 0.967 26 H 0.267 0.733 27 H 0.156 0.844 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 2.788 -7.457 14.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.147 4.147 3 N -0.098 5.098 4 N -0.156 5.156 5 C -0.036 4.036 6 C -0.127 4.127 7 C -0.007 4.007 8 C -0.020 4.020 9 C -0.560 4.560 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.531 5.531 13 Si 0.705 3.295 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.189 1.189 17 C -0.130 4.130 18 C -0.082 4.082 19 N -0.070 5.070 20 H 0.099 0.901 21 H 0.110 0.890 22 H 0.092 0.908 23 H 0.172 0.828 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.173 0.827 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.378 4.314 -7.336 14.209 hybrid contribution 0.213 -1.876 -0.450 1.940 sum -11.165 2.439 -7.786 13.829 Atomic orbital electron populations 1.20075 0.83726 1.04045 1.03611 1.24626 0.96629 0.81401 1.12063 1.74071 0.96930 1.23836 1.14928 1.74903 1.10447 1.06347 1.23938 1.22418 0.84884 0.92486 1.03771 1.20124 0.96978 0.90515 1.05090 1.20327 0.95573 0.94270 0.90491 1.18854 0.91066 0.92868 0.99251 1.20826 1.18397 1.26855 0.89917 0.90723 1.24979 0.96455 0.95917 0.95616 1.69884 1.29697 1.34760 1.18798 0.86801 0.80652 0.79117 0.82920 1.19942 1.21114 1.18862 1.21070 0.91537 1.00539 0.99869 1.21500 1.01386 0.79785 1.05482 1.43605 1.08772 1.06923 1.47734 0.90078 0.88956 0.90806 0.82817 0.94579 0.94917 0.92335 0.82654 0.81881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.41 36.00 0.37 -0.16 15 2 C 0.11 1.79 8.14 -154.23 -1.25 0.54 15 3 N -0.26 -4.87 12.19 32.94 0.40 -4.47 15 4 N -0.31 -6.44 12.31 31.14 0.38 -6.05 15 5 C 0.21 4.12 7.92 -156.05 -1.24 2.89 15 6 C -0.11 -2.02 9.75 -39.40 -0.38 -2.40 15 7 C 0.00 0.00 5.07 -104.55 -0.53 -0.53 15 8 C 0.02 0.36 4.18 -29.04 -0.12 0.24 15 9 C -0.52 -13.76 9.65 -34.44 -0.33 -14.09 15 10 H 0.07 2.18 7.98 -52.49 -0.42 1.76 15 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 12 N -0.89 -26.19 13.96 55.43 0.77 -25.42 15 13 Si 0.88 20.01 27.47 -169.99 -4.67 15.34 15 14 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 16 H -0.26 -5.63 6.54 56.52 0.37 -5.26 15 17 C -0.11 -1.67 9.67 -39.88 -0.39 -2.06 15 18 C 0.04 0.55 10.91 -16.69 -0.18 0.37 15 19 N -0.39 -6.45 2.95 -59.73 -0.18 -6.63 15 20 H 0.08 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.07 0.54 8.14 -51.93 -0.42 0.11 15 23 H 0.15 2.84 8.06 -52.49 -0.42 2.42 15 24 H 0.04 0.74 7.15 -51.93 -0.37 0.37 15 25 H 0.03 0.69 7.51 -51.93 -0.39 0.30 15 26 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 27 H 0.16 2.02 8.06 -52.48 -0.42 1.60 15 28 H 0.16 1.47 8.06 -52.48 -0.42 1.05 15 LS Contribution 250.34 15.07 3.77 3.77 Total: -1.00 -32.21 250.34 -6.55 -38.76 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -2.88 Total: -1.99 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -4.15 Total: -13.31 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 1.38 Total: -42.57 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.21 -6.55 -38.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260245196.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.251 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds