Wall clock time and date at job start Mon Mar 30 2020 03:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47466 * 2 1 4 4 C 1.50704 * 109.47039 * 240.00137 * 2 1 3 5 5 H 1.08003 * 119.99989 * 245.37181 * 4 2 1 6 6 C 1.37871 * 120.00154 * 65.37614 * 4 2 1 7 7 N 1.31513 * 120.00413 * 185.16739 * 6 4 2 8 8 Si 1.86801 * 119.99857 * 5.16434 * 6 4 2 9 9 H 1.48496 * 109.47450 * 270.00006 * 8 6 4 10 10 H 1.48507 * 109.46941 * 30.00440 * 8 6 4 11 11 H 1.48497 * 109.47175 * 150.00051 * 8 6 4 12 12 C 1.50705 * 109.47390 * 120.00598 * 2 1 3 13 13 N 1.32498 * 125.83348 * 60.01892 * 12 2 1 14 14 N 1.28732 * 110.65676 * 180.02562 * 13 12 2 15 15 N 1.40009 * 108.71275 * 359.97438 * 14 13 12 16 16 C 1.36418 * 133.62507 * 180.02562 * 15 14 13 17 17 C 1.34934 * 120.52995 * 179.97438 * 16 15 14 18 18 C 1.40556 * 120.47216 * 0.02562 * 17 16 15 19 19 C 1.36031 * 119.69209 * 359.97438 * 18 17 16 20 20 C 1.37419 * 106.11997 * 359.74267 * 15 14 13 21 21 H 1.09001 * 109.47403 * 174.97233 * 1 2 3 22 22 H 1.08999 * 109.46930 * 294.96575 * 1 2 3 23 23 H 1.08995 * 109.46839 * 54.96996 * 1 2 3 24 24 H 0.97002 * 120.00073 * 354.99342 * 7 6 4 25 25 H 1.08002 * 119.73586 * 0.02562 * 16 15 14 26 26 H 1.08002 * 119.76542 * 179.97438 * 17 16 15 27 27 H 1.08001 * 120.15756 * 179.97438 * 18 17 16 28 28 H 1.08002 * 120.43008 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5798 -1.6363 -1.1338 6 6 1.7930 -0.1783 -2.4797 7 7 2.1412 -0.8472 -3.5572 8 14 0.9742 1.4929 -2.6418 9 1 -0.4990 1.3181 -2.7073 10 1 1.3216 2.3305 -1.4657 11 1 1.4492 2.1587 -3.8812 12 6 2.0324 -0.7105 1.2304 13 7 1.7849 -1.9715 1.5534 14 7 2.3574 -2.2763 2.6654 15 7 3.0447 -1.1524 3.1395 16 6 3.8066 -0.9123 4.2453 17 6 4.3594 0.3020 4.4464 18 6 4.1581 1.3392 3.5194 19 6 3.4009 1.1153 2.4117 20 6 2.8365 -0.1589 2.2132 21 1 -0.3634 -1.0237 -0.0901 22 1 -0.3633 0.4338 0.9316 23 1 -0.3633 0.5899 -0.8415 24 1 2.6310 -1.6803 -3.4737 25 1 3.9694 -1.7008 4.9652 26 1 4.9601 0.4786 5.3265 27 1 4.6026 2.3093 3.6856 28 1 3.2381 1.9038 1.6918 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260258392.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:22 Heat of formation + Delta-G solvation = 90.703098 kcal Electronic energy + Delta-G solvation = -14066.870439 eV Core-core repulsion = 11698.084558 eV Total energy + Delta-G solvation = -2368.785882 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.47421 -38.99366 -36.60273 -34.28070 -33.07877 -32.24133 -29.33807 -26.75378 -25.09101 -24.37293 -24.02739 -21.25361 -19.66185 -18.29249 -17.86015 -17.07036 -16.85262 -16.14341 -15.63566 -15.29288 -14.50971 -14.25410 -13.65488 -13.48951 -13.36618 -13.09226 -12.73310 -12.41221 -12.33231 -11.91166 -11.69295 -11.64905 -11.46327 -10.83588 -10.62696 -10.59184 -8.92465 -8.55974 -6.37213 -0.18627 -0.14624 1.31308 1.48934 1.58783 1.61734 1.76994 2.39260 2.54851 3.11862 3.26316 3.61403 3.75756 3.90630 4.07984 4.16358 4.48540 4.65863 4.71916 4.78102 4.90085 5.02284 5.11201 5.21113 5.31716 5.52972 5.62516 5.88300 5.99396 6.02443 6.53807 7.32399 7.44092 8.66260 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040135 B = 0.009294 C = 0.008491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.472476 B = 3011.993237 C = 3296.805122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.089 3.911 3 H 0.065 0.935 4 C -0.579 4.579 5 H -0.001 1.001 6 C -0.029 4.029 7 N -0.947 5.947 8 Si 1.096 2.904 9 H -0.265 1.265 10 H -0.230 1.230 11 H -0.291 1.291 12 C -0.018 4.018 13 N -0.260 5.260 14 N -0.184 5.184 15 N -0.284 5.284 16 C 0.058 3.942 17 C -0.110 4.110 18 C -0.070 4.070 19 C -0.104 4.104 20 C 0.042 3.958 21 H 0.030 0.970 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.245 0.755 25 H 0.196 0.804 26 H 0.212 0.788 27 H 0.195 0.805 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 11.299 19.050 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.068 3.932 3 H 0.083 0.917 4 C -0.617 4.617 5 H 0.017 0.983 6 C -0.224 4.224 7 N -0.584 5.584 8 Si 0.916 3.084 9 H -0.190 1.190 10 H -0.153 1.153 11 H -0.218 1.218 12 C -0.169 4.169 13 N -0.115 5.115 14 N -0.155 5.155 15 N -0.055 5.055 16 C -0.067 4.067 17 C -0.132 4.132 18 C -0.093 4.093 19 C -0.125 4.125 20 C -0.083 4.083 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.213 0.787 26 H 0.229 0.771 27 H 0.212 0.788 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.896 10.555 18.192 21.390 hybrid contribution 0.938 -1.522 0.312 1.815 sum 4.834 9.033 18.503 21.150 Atomic orbital electron populations 1.21961 0.96677 1.00396 1.00210 1.17662 0.93168 0.95205 0.87186 0.91750 1.22093 1.38325 1.08069 0.93239 0.98295 1.27541 0.96527 1.07124 0.91175 1.70949 1.39116 1.16816 1.31560 0.83463 0.76456 0.71166 0.77361 1.19048 1.15323 1.21791 1.22223 1.04282 0.90419 0.99931 1.73476 1.16168 1.15420 1.06400 1.81988 1.18405 1.04994 1.10080 1.48289 1.30877 1.10365 1.16008 1.22497 0.94069 1.01931 0.88222 1.21758 0.99424 0.89691 1.02307 1.21875 0.94464 1.01974 0.91026 1.21091 0.98036 0.92372 1.01008 1.20493 1.02242 0.93210 0.92310 0.95100 0.92476 0.92703 0.94615 0.78684 0.77085 0.78765 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.09 8.76 71.98 0.63 -5.46 15 2 C 0.09 4.38 2.29 -12.28 -0.03 4.35 15 3 H 0.06 2.84 6.23 -2.39 -0.01 2.83 15 4 C -0.58 -35.29 8.90 25.60 0.23 -35.06 15 5 H 0.00 -0.10 7.97 -2.91 -0.02 -0.12 15 6 C -0.03 -1.72 5.43 84.65 0.46 -1.26 15 7 N -0.95 -62.41 13.70 21.45 0.29 -62.12 15 8 Si 1.10 49.51 25.29 68.60 1.73 51.25 15 9 H -0.26 -11.20 6.81 99.48 0.68 -10.52 15 10 H -0.23 -8.56 6.36 99.48 0.63 -7.92 15 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 15 12 C -0.02 -0.87 5.67 42.51 0.24 -0.63 15 13 N -0.26 -13.63 12.24 -47.44 -0.58 -14.21 15 14 N -0.18 -8.46 13.86 37.02 0.51 -7.95 15 15 N -0.28 -10.20 3.95 -188.05 -0.74 -10.95 15 16 C 0.06 1.25 11.21 83.22 0.93 2.19 15 17 C -0.11 -1.37 9.98 22.08 0.22 -1.15 15 18 C -0.07 -1.01 10.07 22.32 0.22 -0.78 15 19 C -0.10 -2.63 9.95 22.38 0.22 -2.41 15 20 C 0.04 1.60 6.81 38.94 0.27 1.87 15 21 H 0.03 1.51 8.14 -2.39 -0.02 1.49 15 22 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 23 H 0.05 2.33 4.40 -2.39 -0.01 2.32 15 24 H 0.25 16.71 8.72 -92.71 -0.81 15.91 15 25 H 0.20 2.88 8.06 -2.91 -0.02 2.86 15 26 H 0.21 0.29 8.06 -2.91 -0.02 0.27 15 27 H 0.20 0.90 8.06 -2.91 -0.02 0.87 15 28 H 0.17 3.68 7.82 -2.91 -0.02 3.65 15 Total: -1.00 -86.59 243.98 5.64 -80.95 By element: Atomic # 1 Polarization: 0.34 SS G_CDS: 1.03 Total: 1.37 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 3.40 Total: -38.34 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -0.52 Total: -95.22 kcal Atomic # 14 Polarization: 49.51 SS G_CDS: 1.73 Total: 51.25 kcal Total: -86.59 5.64 -80.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258392.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.651 kcal (2) G-P(sol) polarization free energy of solvation -86.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds