Wall clock time and date at job start Mon Mar 30 2020 02:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32509 * 125.18125 * 2 1 4 4 C 1.32843 * 109.67615 * 180.26949 * 3 2 1 5 5 C 1.40654 * 132.88289 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.37067 * 0.04333 * 5 4 3 7 7 C 1.50708 * 109.47182 * 84.99906 * 6 5 4 8 8 H 1.08004 * 119.99613 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99775 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00613 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99725 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46671 * 90.00557 * 11 9 7 13 13 H 1.48498 * 109.47307 * 210.00048 * 11 9 7 14 14 H 1.48500 * 109.47107 * 330.00566 * 11 9 7 15 15 C 1.36187 * 119.26543 * 180.02562 * 5 4 3 16 16 C 1.40276 * 119.62253 * 0.02562 * 15 5 4 17 17 C 1.35188 * 120.20950 * 359.97438 * 16 15 5 18 18 N 1.35929 * 120.57111 * 0.04215 * 17 16 15 19 19 N 1.31254 * 125.17898 * 180.30301 * 2 1 3 20 20 H 1.09009 * 109.47067 * 269.72327 * 1 2 3 21 21 H 1.08996 * 109.47253 * 29.71673 * 1 2 3 22 22 H 1.08998 * 109.47563 * 149.72485 * 1 2 3 23 23 H 1.08997 * 109.47430 * 205.00095 * 6 5 4 24 24 H 1.09005 * 109.46873 * 325.00188 * 6 5 4 25 25 H 0.96992 * 120.00594 * 180.02562 * 10 9 7 26 26 H 1.08002 * 120.18877 * 180.02562 * 15 5 4 27 27 H 1.07991 * 119.89527 * 180.02562 * 16 15 5 28 28 H 1.08001 * 119.71354 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2705 1.0830 0.0000 4 6 3.5505 0.7279 -0.0059 5 6 4.7484 1.4652 -0.0090 6 6 4.7157 2.9718 -0.0044 7 6 4.5872 3.4673 1.4131 8 1 4.5340 2.7616 2.2290 9 6 4.5364 4.8213 1.6681 10 7 4.5997 5.6805 0.6746 11 14 4.3764 5.4353 3.4251 12 1 5.7290 5.6285 4.0070 13 1 3.6450 6.7277 3.4331 14 1 3.6282 4.4380 4.2318 15 6 5.9381 0.8024 -0.0157 16 6 5.9503 -0.6003 -0.0200 17 6 4.7880 -1.2907 -0.0170 18 7 3.5959 -0.6375 -0.0106 19 7 2.2632 -1.0728 -0.0057 20 1 -0.3634 -0.0050 1.0277 21 1 -0.3633 0.8925 -0.5094 22 1 -0.3634 -0.8875 -0.5181 23 1 5.6371 3.3566 -0.4416 24 1 3.8636 3.3185 -0.5891 25 1 4.5644 6.6330 0.8540 26 1 6.8668 1.3536 -0.0177 27 1 6.8912 -1.1303 -0.0250 28 1 4.8068 -2.3705 -0.0199 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260277252.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:00 Heat of formation + Delta-G solvation = 106.473101 kcal Electronic energy + Delta-G solvation = -13872.505042 eV Core-core repulsion = 11504.403000 eV Total energy + Delta-G solvation = -2368.102043 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.13074 -37.60774 -34.29567 -32.43296 -31.64880 -29.98035 -28.30466 -27.06882 -23.66911 -22.88442 -21.36302 -20.06812 -17.21717 -16.61479 -16.38541 -15.65983 -15.25446 -14.59400 -13.51397 -13.21740 -13.15628 -12.60021 -12.39784 -12.21849 -11.91811 -11.37594 -11.26723 -11.13969 -10.63253 -10.56060 -10.40691 -9.68808 -9.44614 -9.32083 -8.93031 -8.40802 -7.50838 -6.03005 -4.06192 1.26169 1.43372 2.58975 3.13455 3.31770 3.38183 3.43230 3.98460 4.44287 4.46469 4.53772 5.08665 5.16753 5.34007 5.45283 5.50383 5.72716 5.86239 5.92422 6.02808 6.38385 6.66651 6.79656 6.86732 6.94775 7.24119 7.49348 7.68363 7.90548 8.26780 8.54484 8.95191 9.56440 11.07122 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.009600 C = 0.007936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.304464 B = 2916.052055 C = 3527.576560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.241 3.759 3 N -0.522 5.522 4 C 0.291 3.709 5 C -0.010 4.010 6 C 0.059 3.941 7 C -0.506 4.506 8 H 0.053 0.947 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C -0.106 4.106 16 C -0.137 4.137 17 C 0.066 3.934 18 N -0.286 5.286 19 N -0.363 5.363 20 H 0.083 0.917 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.037 0.963 24 H 0.043 0.957 25 H 0.263 0.737 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 -11.545 -1.882 11.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.039 4.039 3 N -0.252 5.252 4 C 0.038 3.962 5 C -0.013 4.013 6 C 0.022 3.978 7 C -0.544 4.544 8 H 0.072 0.928 9 C -0.140 4.140 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.199 1.199 15 C -0.132 4.132 16 C -0.159 4.159 17 C -0.061 4.061 18 N -0.059 5.059 19 N -0.197 5.197 20 H 0.102 0.898 21 H 0.106 0.894 22 H 0.097 0.903 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.163 0.837 27 H 0.169 0.831 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.698 -11.739 -1.923 11.916 hybrid contribution 0.236 0.309 1.035 1.105 sum -0.462 -11.430 -0.888 11.473 Atomic orbital electron populations 1.20086 0.83945 1.03799 1.03669 1.24397 0.98335 0.85889 0.95247 1.70877 0.98500 1.28388 1.27389 1.21780 0.94520 0.81628 0.98249 1.20113 0.87096 1.00145 0.93943 1.18312 0.99241 0.81723 0.98545 1.20881 1.50855 0.91491 0.91148 0.92833 1.24932 0.95074 0.96714 0.97252 1.69936 1.50261 1.02086 1.30834 0.86523 0.78119 0.78285 0.84695 1.20592 1.21049 1.19928 1.21098 0.98575 0.93133 1.00432 1.20899 0.96763 0.94947 1.03326 1.21198 0.81415 0.98836 1.04691 1.47648 1.05783 1.07521 1.44993 1.78286 0.83963 1.21452 1.36041 0.89845 0.89356 0.90287 0.94465 0.93862 0.92780 0.83672 0.83102 0.82328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.51 36.01 0.38 -0.40 15 2 C 0.24 4.76 8.09 -157.04 -1.27 3.49 15 3 N -0.52 -12.18 11.25 -10.16 -0.11 -12.30 15 4 C 0.29 6.55 7.60 -156.33 -1.19 5.36 15 5 C -0.01 -0.21 5.09 -104.45 -0.53 -0.74 15 6 C 0.06 1.53 5.13 -29.03 -0.15 1.38 15 7 C -0.51 -14.28 9.09 -34.44 -0.31 -14.59 15 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 15 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 10 N -0.89 -26.35 13.29 55.43 0.74 -25.61 15 11 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 15 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 15 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15 15 C -0.11 -1.83 9.70 -39.55 -0.38 -2.22 15 16 C -0.14 -1.87 9.99 -39.90 -0.40 -2.27 15 17 C 0.07 1.00 11.20 -16.82 -0.19 0.81 15 18 N -0.29 -5.63 3.90 -12.34 -0.05 -5.68 15 19 N -0.36 -7.19 12.78 32.38 0.41 -6.77 15 20 H 0.08 1.04 8.14 -51.92 -0.42 0.62 15 21 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.08 0.91 8.14 -51.93 -0.42 0.48 15 23 H 0.04 0.96 8.05 -51.93 -0.42 0.54 15 24 H 0.04 1.23 8.13 -51.93 -0.42 0.81 15 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 26 H 0.15 2.21 8.06 -52.49 -0.42 1.79 15 27 H 0.15 1.37 8.06 -52.49 -0.42 0.95 15 28 H 0.16 1.81 8.06 -52.49 -0.42 1.39 15 LS Contribution 254.77 15.07 3.84 3.84 Total: -1.00 -33.55 254.77 -7.25 -40.80 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -2.92 Total: -3.56 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -4.14 Total: -7.52 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.99 Total: -50.36 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.55 -7.25 -40.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277252.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.274 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds