Wall clock time and date at job start Mon Mar 30 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32509 * 125.18125 * 2 1 4 4 C 1.32843 * 109.67615 * 180.26949 * 3 2 1 5 5 C 1.40654 * 132.88289 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.37067 * 0.04333 * 5 4 3 7 7 C 1.50708 * 109.47182 * 84.99906 * 6 5 4 8 8 H 1.08004 * 119.99613 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99775 * 180.02562 * 7 6 5 10 10 N 1.31508 * 120.00613 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99725 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46671 * 90.00557 * 11 9 7 13 13 H 1.48498 * 109.47307 * 210.00048 * 11 9 7 14 14 H 1.48500 * 109.47107 * 330.00566 * 11 9 7 15 15 C 1.36187 * 119.26543 * 180.02562 * 5 4 3 16 16 C 1.40276 * 119.62253 * 0.02562 * 15 5 4 17 17 C 1.35188 * 120.20950 * 359.97438 * 16 15 5 18 18 N 1.35929 * 120.57111 * 0.04215 * 17 16 15 19 19 N 1.31254 * 125.17898 * 180.30301 * 2 1 3 20 20 H 1.09009 * 109.47067 * 269.72327 * 1 2 3 21 21 H 1.08996 * 109.47253 * 29.71673 * 1 2 3 22 22 H 1.08998 * 109.47563 * 149.72485 * 1 2 3 23 23 H 1.08997 * 109.47430 * 205.00095 * 6 5 4 24 24 H 1.09005 * 109.46873 * 325.00188 * 6 5 4 25 25 H 0.96992 * 120.00594 * 180.02562 * 10 9 7 26 26 H 1.08002 * 120.18877 * 180.02562 * 15 5 4 27 27 H 1.07991 * 119.89527 * 180.02562 * 16 15 5 28 28 H 1.08001 * 119.71354 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2705 1.0830 0.0000 4 6 3.5505 0.7279 -0.0059 5 6 4.7484 1.4652 -0.0090 6 6 4.7157 2.9718 -0.0044 7 6 4.5872 3.4673 1.4131 8 1 4.5340 2.7616 2.2290 9 6 4.5364 4.8213 1.6681 10 7 4.5997 5.6805 0.6746 11 14 4.3764 5.4353 3.4251 12 1 5.7290 5.6285 4.0070 13 1 3.6450 6.7277 3.4331 14 1 3.6282 4.4380 4.2318 15 6 5.9381 0.8024 -0.0157 16 6 5.9503 -0.6003 -0.0200 17 6 4.7880 -1.2907 -0.0170 18 7 3.5959 -0.6375 -0.0106 19 7 2.2632 -1.0728 -0.0057 20 1 -0.3634 -0.0050 1.0277 21 1 -0.3633 0.8925 -0.5094 22 1 -0.3634 -0.8875 -0.5181 23 1 5.6371 3.3566 -0.4416 24 1 3.8636 3.3185 -0.5891 25 1 4.5644 6.6330 0.8540 26 1 6.8668 1.3536 -0.0177 27 1 6.8912 -1.1303 -0.0250 28 1 4.8068 -2.3705 -0.0199 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260277252.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:59 Heat of formation + Delta-G solvation = 85.062194 kcal Electronic energy + Delta-G solvation = -13873.433489 eV Core-core repulsion = 11504.403000 eV Total energy + Delta-G solvation = -2369.030489 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.58408 -39.01276 -36.04337 -34.32836 -32.97888 -31.61570 -29.65287 -28.79140 -25.52356 -24.37701 -22.87752 -21.55778 -18.69556 -18.53431 -17.98070 -17.18529 -16.71436 -16.32857 -15.04584 -14.54422 -14.48745 -14.25747 -13.93398 -13.76333 -13.33431 -13.10760 -12.89892 -12.57399 -12.47947 -12.40745 -12.11779 -11.59603 -11.30051 -10.98404 -10.58768 -10.29377 -9.02132 -8.18731 -6.31011 -0.11285 -0.00124 1.25292 1.37722 1.40288 1.50719 1.73918 2.37318 2.56959 3.08794 3.13222 3.16714 3.86938 3.92318 4.15211 4.38042 4.50075 4.67776 4.80205 4.87563 4.97821 5.20528 5.26383 5.31908 5.50424 5.54012 5.68691 5.72242 5.96654 6.15024 6.77426 7.07217 7.35857 8.90495 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.009600 C = 0.007936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.304464 B = 2916.052055 C = 3527.576560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.233 3.767 3 N -0.581 5.581 4 C 0.265 3.735 5 C -0.067 4.067 6 C 0.074 3.926 7 C -0.520 4.520 8 H 0.044 0.956 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.962 3.038 12 H -0.263 1.263 13 H -0.279 1.279 14 H -0.277 1.277 15 C -0.075 4.075 16 C -0.120 4.120 17 C 0.070 3.930 18 N -0.291 5.291 19 N -0.374 5.374 20 H 0.098 0.902 21 H 0.090 0.910 22 H 0.106 0.894 23 H 0.027 0.973 24 H -0.002 1.002 25 H 0.266 0.734 26 H 0.165 0.835 27 H 0.214 0.786 28 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 -13.829 -0.998 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.046 4.046 3 N -0.313 5.313 4 C 0.014 3.986 5 C -0.071 4.071 6 C 0.037 3.963 7 C -0.558 4.558 8 H 0.062 0.938 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.787 3.213 12 H -0.187 1.187 13 H -0.205 1.205 14 H -0.202 1.202 15 C -0.101 4.101 16 C -0.141 4.141 17 C -0.057 4.057 18 N -0.065 5.065 19 N -0.208 5.208 20 H 0.117 0.883 21 H 0.109 0.891 22 H 0.124 0.876 23 H 0.045 0.955 24 H 0.016 0.984 25 H 0.075 0.925 26 H 0.183 0.817 27 H 0.231 0.769 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.624 -14.040 -1.042 14.093 hybrid contribution -0.069 0.884 0.706 1.134 sum 0.555 -13.156 -0.336 13.172 Atomic orbital electron populations 1.20313 0.80688 1.05227 1.05050 1.25309 1.00288 0.85003 0.93994 1.70821 0.99834 1.30639 1.29983 1.21772 0.94423 0.83136 0.99255 1.19797 0.89123 0.98042 1.00098 1.17885 0.96564 0.85274 0.96599 1.21164 1.50611 0.91755 0.92251 0.93775 1.25808 0.94642 0.96928 1.01530 1.70053 1.51166 1.02440 1.33010 0.85496 0.78787 0.77520 0.79513 1.18750 1.20471 1.20163 1.21538 0.97437 0.95283 0.95830 1.21531 0.98769 0.93020 1.00791 1.22300 0.80211 1.01186 1.02012 1.47925 1.06948 1.06796 1.44784 1.78192 0.84144 1.21474 1.36998 0.88334 0.89117 0.87584 0.95469 0.98405 0.92516 0.81709 0.76950 0.77796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.47 10.51 71.24 0.75 -0.72 15 2 C 0.23 9.31 8.09 138.70 1.12 10.43 15 3 N -0.58 -28.31 11.25 -186.04 -2.09 -30.40 15 4 C 0.27 12.20 7.60 134.10 1.02 13.22 15 5 C -0.07 -2.99 5.09 -19.75 -0.10 -3.09 15 6 C 0.07 4.05 5.13 29.10 0.15 4.20 15 7 C -0.52 -30.41 9.09 25.60 0.23 -30.18 15 8 H 0.04 2.59 7.74 -2.91 -0.02 2.57 15 9 C 0.01 0.54 5.46 84.65 0.46 1.00 15 10 N -0.93 -56.46 13.29 21.44 0.28 -56.18 15 11 Si 0.96 45.39 29.54 68.60 2.03 47.41 15 12 H -0.26 -11.59 7.11 99.48 0.71 -10.88 15 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 14 H -0.28 -13.02 7.11 99.48 0.71 -12.32 15 15 C -0.07 -2.41 9.70 22.29 0.22 -2.20 15 16 C -0.12 -2.68 9.99 22.06 0.22 -2.46 15 17 C 0.07 1.82 11.20 83.35 0.93 2.76 15 18 N -0.29 -11.11 3.90 -192.97 -0.75 -11.86 15 19 N -0.37 -14.49 12.78 -51.47 -0.66 -15.15 15 20 H 0.10 2.37 8.14 -2.38 -0.02 2.35 15 21 H 0.09 2.40 8.14 -2.39 -0.02 2.38 15 22 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.03 1.47 8.05 -2.39 -0.02 1.45 15 24 H 0.00 -0.15 8.13 -2.38 -0.02 -0.17 15 25 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 26 H 0.17 4.57 8.06 -2.91 -0.02 4.54 15 27 H 0.21 2.20 8.06 -2.92 -0.02 2.18 15 28 H 0.21 3.44 8.06 -2.91 -0.02 3.41 15 Total: -1.00 -78.14 254.77 4.97 -73.17 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: 1.16 Total: 0.05 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 5.00 Total: -7.04 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.22 Total: -113.59 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -78.14 4.97 -73.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260277252.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.230 kcal (2) G-P(sol) polarization free energy of solvation -78.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds