Wall clock time and date at job start Mon Mar 30 2020 02:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32511 * 125.17756 * 2 1 4 4 C 1.32854 * 109.67423 * 180.18806 * 3 2 1 5 5 C 1.40655 * 132.88671 * 179.89081 * 4 3 2 6 6 C 1.36185 * 119.26619 * 179.68230 * 5 4 3 7 7 C 1.50698 * 120.18771 * 179.97438 * 6 5 4 8 8 C 1.50711 * 109.47101 * 90.00057 * 7 6 5 9 9 H 1.07997 * 119.99315 * 359.97438 * 8 7 6 10 10 C 1.37869 * 119.99942 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00247 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99812 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47228 * 60.00336 * 12 10 8 14 14 H 1.48508 * 109.47033 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47222 * 299.99958 * 12 10 8 16 16 C 1.40269 * 119.62074 * 359.97438 * 6 5 4 17 17 C 1.35190 * 120.21696 * 359.97438 * 16 6 5 18 18 N 1.35926 * 120.56776 * 0.04127 * 17 16 6 19 19 N 1.31251 * 125.17787 * 179.74472 * 2 1 3 20 20 H 1.09004 * 109.47306 * 270.28285 * 1 2 3 21 21 H 1.08997 * 109.47091 * 30.28260 * 1 2 3 22 22 H 1.09000 * 109.46902 * 150.28393 * 1 2 3 23 23 H 1.08000 * 120.36538 * 359.65547 * 5 4 3 24 24 H 1.09004 * 109.47031 * 209.99516 * 7 6 5 25 25 H 1.08995 * 109.47275 * 329.99731 * 7 6 5 26 26 H 0.96996 * 120.00161 * 180.02562 * 11 10 8 27 27 H 1.08009 * 119.89311 * 180.02562 * 16 6 5 28 28 H 1.08003 * 119.71659 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2704 1.0831 0.0000 4 6 3.5506 0.7280 -0.0041 5 6 4.7485 1.4652 -0.0079 6 6 5.9381 0.8024 -0.0051 7 6 7.2341 1.5716 -0.0097 8 6 7.6668 1.8351 1.4097 9 1 7.0634 1.4814 2.2326 10 6 8.8329 2.5277 1.6575 11 7 9.5678 2.9580 0.6554 12 14 9.3688 2.8550 3.4168 13 1 9.5615 1.5635 4.1240 14 1 10.6460 3.6129 3.4124 15 1 8.3249 3.6494 4.1127 16 6 5.9503 -0.6002 0.0020 17 6 4.7881 -1.2907 0.0066 18 7 3.5960 -0.6376 0.0035 19 7 2.2632 -1.0728 0.0048 20 1 -0.3634 0.0051 1.0277 21 1 -0.3633 0.8874 -0.5182 22 1 -0.3633 -0.8925 -0.5094 23 1 4.7250 2.5450 -0.0134 24 1 8.0005 0.9890 -0.5209 25 1 7.0921 2.5197 -0.5283 26 1 10.3884 3.4450 0.8298 27 1 6.8914 -1.1303 0.0046 28 1 4.8069 -2.3705 0.0124 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260362822.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:03 Heat of formation + Delta-G solvation = 101.470020 kcal Electronic energy + Delta-G solvation = -13565.510741 eV Core-core repulsion = 11197.191749 eV Total energy + Delta-G solvation = -2368.318993 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.22959 -37.83666 -34.13953 -32.64387 -31.79055 -30.02723 -28.51630 -27.27957 -23.88578 -22.78837 -21.30403 -20.35898 -17.41628 -16.53047 -16.35378 -15.84430 -15.04264 -14.40277 -14.30238 -13.37649 -13.34189 -12.61788 -12.49308 -12.36532 -11.97255 -11.46523 -11.30279 -11.06729 -10.78665 -10.62862 -10.57316 -9.85073 -9.71575 -9.59511 -8.75161 -8.56052 -7.73104 -6.18996 -4.24537 1.18082 1.42487 2.49584 3.00469 3.25107 3.29928 3.32918 3.90481 4.26485 4.34643 4.43901 5.04187 5.16381 5.19833 5.42049 5.53948 5.59597 5.71167 5.80789 5.98671 6.40304 6.64476 6.68969 6.73611 6.88504 7.17717 7.31919 7.49439 7.75358 8.08747 8.35830 8.79519 9.40734 10.90809 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.051445 B = 0.006456 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.139616 B = 4336.037583 C = 4480.822454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.247 3.753 3 N -0.563 5.563 4 C 0.294 3.706 5 C -0.133 4.133 6 C 0.022 3.978 7 C 0.048 3.952 8 C -0.520 4.520 9 H 0.059 0.941 10 C 0.063 3.937 11 N -0.890 5.890 12 Si 0.898 3.102 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.136 4.136 17 C 0.091 3.909 18 N -0.292 5.292 19 N -0.365 5.365 20 H 0.083 0.917 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.153 0.847 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.160 0.840 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 -6.427 -1.732 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.033 4.033 3 N -0.295 5.295 4 C 0.044 3.956 5 C -0.155 4.155 6 C 0.014 3.986 7 C 0.011 3.989 8 C -0.558 4.558 9 H 0.077 0.923 10 C -0.140 4.140 11 N -0.528 5.528 12 Si 0.726 3.274 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.200 1.200 16 C -0.158 4.158 17 C -0.036 4.036 18 N -0.066 5.066 19 N -0.198 5.198 20 H 0.101 0.899 21 H 0.105 0.895 22 H 0.099 0.901 23 H 0.170 0.830 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.177 0.823 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.008 -6.721 -1.772 12.185 hybrid contribution 0.697 0.177 1.009 1.239 sum -9.311 -6.544 -0.764 11.406 Atomic orbital electron populations 1.20084 0.83972 1.03831 1.03631 1.24313 0.98185 0.85946 0.94849 1.70749 0.98447 1.29147 1.31157 1.21870 0.94320 0.82395 0.97042 1.20192 0.86669 1.01024 1.07571 1.20829 0.97610 0.93251 0.86950 1.18460 0.86823 0.95138 0.98465 1.20919 1.07391 1.36662 0.90871 0.92316 1.24979 0.96255 0.95258 0.97486 1.69927 1.14697 1.37360 1.30828 0.86546 0.77979 0.78551 0.84360 1.20082 1.21102 1.20022 1.21118 0.97000 0.94886 1.02780 1.21435 0.81145 0.99102 1.01933 1.47498 1.05751 1.07374 1.45933 1.78312 0.83915 1.21389 1.36215 0.89859 0.89544 0.90141 0.82981 0.94249 0.94250 0.92502 0.82278 0.81903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 36.01 0.38 -0.27 15 2 C 0.25 4.29 8.09 -157.04 -1.27 3.02 15 3 N -0.56 -11.13 11.25 -10.15 -0.11 -11.24 15 4 C 0.29 5.88 7.88 -156.31 -1.23 4.65 15 5 C -0.13 -2.61 9.75 -39.41 -0.38 -3.00 15 6 C 0.02 0.42 5.07 -104.60 -0.53 -0.11 15 7 C 0.05 1.11 5.11 -29.03 -0.15 0.96 15 8 C -0.52 -13.50 9.09 -34.44 -0.31 -13.81 15 9 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 11 N -0.89 -24.76 13.29 55.43 0.74 -24.03 15 12 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 15 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 14 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 16 C -0.14 -2.23 9.68 -39.90 -0.39 -2.62 15 17 C 0.09 1.43 11.20 -16.82 -0.19 1.24 15 18 N -0.29 -5.46 3.90 -12.34 -0.05 -5.51 15 19 N -0.36 -6.72 12.78 32.38 0.41 -6.30 15 20 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.15 2.92 8.06 -52.49 -0.42 2.50 15 24 H 0.04 0.93 8.10 -51.93 -0.42 0.51 15 25 H 0.04 0.96 8.08 -51.93 -0.42 0.54 15 26 H 0.27 7.02 8.31 -40.82 -0.34 6.68 15 27 H 0.16 2.24 8.06 -52.48 -0.42 1.82 15 28 H 0.16 1.95 8.06 -52.48 -0.42 1.53 15 LS Contribution 254.75 15.07 3.84 3.84 Total: -1.00 -30.59 254.75 -7.28 -37.88 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -2.92 Total: -1.83 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -4.17 Total: -8.35 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.99 Total: -47.08 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.59 -7.28 -37.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362822.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.348 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds