Wall clock time and date at job start Mon Mar 30 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32511 * 125.17756 * 2 1 4 4 C 1.32854 * 109.67423 * 180.18806 * 3 2 1 5 5 C 1.40655 * 132.88671 * 179.89081 * 4 3 2 6 6 C 1.36185 * 119.26619 * 179.68230 * 5 4 3 7 7 C 1.50698 * 120.18771 * 179.97438 * 6 5 4 8 8 C 1.50711 * 109.47101 * 90.00057 * 7 6 5 9 9 H 1.07997 * 119.99315 * 359.97438 * 8 7 6 10 10 C 1.37869 * 119.99942 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00247 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99812 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47228 * 60.00336 * 12 10 8 14 14 H 1.48508 * 109.47033 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47222 * 299.99958 * 12 10 8 16 16 C 1.40269 * 119.62074 * 359.97438 * 6 5 4 17 17 C 1.35190 * 120.21696 * 359.97438 * 16 6 5 18 18 N 1.35926 * 120.56776 * 0.04127 * 17 16 6 19 19 N 1.31251 * 125.17787 * 179.74472 * 2 1 3 20 20 H 1.09004 * 109.47306 * 270.28285 * 1 2 3 21 21 H 1.08997 * 109.47091 * 30.28260 * 1 2 3 22 22 H 1.09000 * 109.46902 * 150.28393 * 1 2 3 23 23 H 1.08000 * 120.36538 * 359.65547 * 5 4 3 24 24 H 1.09004 * 109.47031 * 209.99516 * 7 6 5 25 25 H 1.08995 * 109.47275 * 329.99731 * 7 6 5 26 26 H 0.96996 * 120.00161 * 180.02562 * 11 10 8 27 27 H 1.08009 * 119.89311 * 180.02562 * 16 6 5 28 28 H 1.08003 * 119.71659 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2704 1.0831 0.0000 4 6 3.5506 0.7280 -0.0041 5 6 4.7485 1.4652 -0.0079 6 6 5.9381 0.8024 -0.0051 7 6 7.2341 1.5716 -0.0097 8 6 7.6668 1.8351 1.4097 9 1 7.0634 1.4814 2.2326 10 6 8.8329 2.5277 1.6575 11 7 9.5678 2.9580 0.6554 12 14 9.3688 2.8550 3.4168 13 1 9.5615 1.5635 4.1240 14 1 10.6460 3.6129 3.4124 15 1 8.3249 3.6494 4.1127 16 6 5.9503 -0.6002 0.0020 17 6 4.7881 -1.2907 0.0066 18 7 3.5960 -0.6376 0.0035 19 7 2.2632 -1.0728 0.0048 20 1 -0.3634 0.0051 1.0277 21 1 -0.3633 0.8874 -0.5182 22 1 -0.3633 -0.8925 -0.5094 23 1 4.7250 2.5450 -0.0134 24 1 8.0005 0.9890 -0.5209 25 1 7.0921 2.5197 -0.5283 26 1 10.3884 3.4450 0.8298 27 1 6.8914 -1.1303 0.0046 28 1 4.8069 -2.3705 0.0124 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260362822.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:02 Heat of formation + Delta-G solvation = 84.184395 kcal Electronic energy + Delta-G solvation = -13566.260302 eV Core-core repulsion = 11197.191749 eV Total energy + Delta-G solvation = -2369.068554 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.62928 -39.26401 -35.80594 -34.39947 -33.12914 -31.50213 -29.88959 -28.83165 -25.70111 -24.16269 -22.85309 -21.74637 -18.82801 -18.52563 -17.78958 -17.25790 -16.73481 -15.90299 -15.75548 -14.58637 -14.56572 -14.26835 -13.92784 -13.72137 -13.31158 -13.24574 -12.76790 -12.56517 -12.51107 -12.29665 -12.16630 -11.67964 -11.41271 -11.13821 -10.59463 -10.18910 -9.18332 -8.21737 -6.33688 -0.19794 -0.03978 1.16748 1.43729 1.45120 1.52892 1.67262 2.35872 2.51774 2.95317 3.12322 3.15140 3.79744 3.84807 4.15747 4.34556 4.38736 4.70795 4.80256 4.84752 4.94564 5.10949 5.22529 5.32176 5.42976 5.50529 5.69937 5.72593 5.84008 6.10867 6.77364 6.96598 7.35177 8.87818 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.051445 B = 0.006456 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.139616 B = 4336.037583 C = 4480.822454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.243 3.757 3 N -0.588 5.588 4 C 0.276 3.724 5 C -0.145 4.145 6 C 0.016 3.984 7 C 0.055 3.945 8 C -0.532 4.532 9 H 0.056 0.944 10 C 0.013 3.987 11 N -0.924 5.924 12 Si 0.959 3.041 13 H -0.266 1.266 14 H -0.282 1.282 15 H -0.274 1.274 16 C -0.138 4.138 17 C 0.107 3.893 18 N -0.300 5.300 19 N -0.375 5.375 20 H 0.101 0.899 21 H 0.098 0.902 22 H 0.101 0.899 23 H 0.144 0.856 24 H 0.032 0.968 25 H 0.016 0.984 26 H 0.267 0.733 27 H 0.185 0.815 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.509 -7.978 -0.970 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.037 4.037 3 N -0.321 5.321 4 C 0.026 3.974 5 C -0.167 4.167 6 C 0.008 3.992 7 C 0.019 3.981 8 C -0.570 4.570 9 H 0.074 0.926 10 C -0.186 4.186 11 N -0.563 5.563 12 Si 0.784 3.216 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.199 1.199 16 C -0.160 4.160 17 C -0.020 4.020 18 N -0.073 5.073 19 N -0.209 5.209 20 H 0.120 0.880 21 H 0.116 0.884 22 H 0.120 0.880 23 H 0.162 0.838 24 H 0.050 0.950 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.203 0.797 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.944 -8.284 -1.011 13.763 hybrid contribution 0.910 0.635 0.732 1.330 sum -10.034 -7.649 -0.279 12.620 Atomic orbital electron populations 1.20357 0.80211 1.05483 1.05285 1.25357 1.00282 0.84896 0.93141 1.70757 0.98747 1.30533 1.32092 1.21865 0.94442 0.83287 0.97851 1.20096 0.87135 1.00834 1.08608 1.20568 0.95783 0.94773 0.88070 1.18211 0.88496 0.94487 0.96946 1.21240 1.07332 1.36334 0.92088 0.92570 1.25771 0.96443 0.95140 1.01241 1.70032 1.15191 1.38274 1.32780 0.85580 0.77491 0.78680 0.79810 1.19051 1.20739 1.19915 1.21287 0.98606 0.93297 1.02805 1.22097 0.79773 1.00945 0.99202 1.47779 1.06701 1.07096 1.45734 1.78281 0.83776 1.21935 1.36868 0.88015 0.88362 0.88009 0.83849 0.94978 0.96602 0.92422 0.79744 0.77540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.11 10.51 71.24 0.75 -0.36 15 2 C 0.24 8.02 8.09 138.70 1.12 9.14 15 3 N -0.59 -22.93 11.25 -186.03 -2.09 -25.03 15 4 C 0.28 10.95 7.88 134.09 1.06 12.01 15 5 C -0.14 -5.81 9.75 22.38 0.22 -5.59 15 6 C 0.02 0.63 5.07 -19.85 -0.10 0.53 15 7 C 0.06 2.63 5.11 29.10 0.15 2.78 15 8 C -0.53 -27.83 9.09 25.60 0.23 -27.59 15 9 H 0.06 2.91 7.74 -2.91 -0.02 2.88 15 10 C 0.01 0.72 5.46 84.65 0.46 1.18 15 11 N -0.92 -52.04 13.29 21.44 0.28 -51.75 15 12 Si 0.96 41.99 29.54 68.60 2.03 44.01 15 13 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 15 H -0.27 -11.85 7.11 99.48 0.71 -11.15 15 16 C -0.14 -4.30 9.68 22.06 0.21 -4.08 15 17 C 0.11 3.06 11.20 83.36 0.93 3.99 15 18 N -0.30 -10.70 3.90 -192.95 -0.75 -11.45 15 19 N -0.38 -13.04 12.78 -51.47 -0.66 -13.70 15 20 H 0.10 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.10 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15 23 H 0.14 5.80 8.06 -2.91 -0.02 5.78 15 24 H 0.03 1.54 8.10 -2.38 -0.02 1.52 15 25 H 0.02 0.81 8.08 -2.39 -0.02 0.79 15 26 H 0.27 14.24 8.31 -92.71 -0.77 13.47 15 27 H 0.19 4.73 8.06 -2.91 -0.02 4.70 15 28 H 0.21 4.03 8.06 -2.91 -0.02 4.01 15 Total: -1.00 -65.64 254.75 5.00 -60.64 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.16 Total: 5.28 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.04 Total: -8.00 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.22 Total: -101.93 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -65.64 5.00 -60.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362822.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.822 kcal (2) G-P(sol) polarization free energy of solvation -65.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds