Wall clock time and date at job start Mon Mar 30 2020 02:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00158 * 2 1 4 4 H 1.48492 * 109.47491 * 89.99729 * 3 2 1 5 5 H 1.48504 * 109.46923 * 210.00100 * 3 2 1 6 6 H 1.48502 * 109.46785 * 329.99622 * 3 2 1 7 7 C 1.37875 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99790 * 6.64291 * 7 2 1 9 9 C 1.50702 * 119.99840 * 186.63803 * 7 2 1 10 10 H 1.08998 * 109.46680 * 305.17475 * 9 7 2 11 11 N 1.46898 * 109.46918 * 65.18127 * 9 7 2 12 12 C 1.50703 * 109.46574 * 185.18323 * 9 7 2 13 13 C 1.38550 * 126.21193 * 264.68220 * 12 9 7 14 14 N 1.31487 * 109.00500 * 179.88325 * 13 12 9 15 15 N 1.40042 * 108.91658 * 0.39222 * 14 13 12 16 16 C 1.36532 * 132.43650 * 179.75944 * 15 14 13 17 17 C 1.34930 * 120.66320 * 179.97438 * 16 15 14 18 18 C 1.40479 * 120.43009 * 0.02562 * 17 16 15 19 19 C 1.36061 * 119.58876 * 359.97438 * 18 17 16 20 20 C 1.37133 * 107.44178 * 359.75255 * 15 14 13 21 21 H 0.96995 * 120.00519 * 174.93569 * 1 2 3 22 22 H 1.00897 * 111.00041 * 293.80022 * 11 9 7 23 23 H 1.00900 * 111.00023 * 57.76152 * 11 9 7 24 24 H 1.08002 * 125.49564 * 0.02562 * 13 12 9 25 25 H 1.08005 * 119.66733 * 359.97011 * 16 15 14 26 26 H 1.07997 * 119.78592 * 180.02562 * 17 16 15 27 27 H 1.07996 * 120.20313 * 180.02562 * 18 17 16 28 28 H 1.08001 * 120.38828 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4698 -2.1263 -0.1073 9 6 3.5039 -1.1984 0.1514 10 1 3.9478 -0.5603 -0.6127 11 7 3.8636 -0.6915 1.4824 12 6 4.0205 -2.6053 -0.0070 13 6 4.2872 -3.4994 1.0172 14 7 4.7202 -4.6276 0.4988 15 7 4.7588 -4.5012 -0.8954 16 6 5.1295 -5.3617 -1.8885 17 6 5.0711 -4.9849 -3.1828 18 6 4.6275 -3.6979 -3.5299 19 6 4.2547 -2.8292 -2.5513 20 6 4.3218 -3.2390 -1.2060 21 1 -0.4851 -0.8367 -0.0741 22 1 3.6178 0.2825 1.5770 23 1 3.4339 -1.2451 2.2084 24 1 4.1579 -3.3025 2.0712 25 1 5.4729 -6.3539 -1.6356 26 1 5.3673 -5.6771 -3.9570 27 1 4.5818 -3.4003 -4.5670 28 1 3.9112 -1.8368 -2.8036 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260378284.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:36 Heat of formation + Delta-G solvation = 103.648833 kcal Electronic energy + Delta-G solvation = -14081.026476 eV Core-core repulsion = 11712.801963 eV Total energy + Delta-G solvation = -2368.224512 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.42548 -36.90649 -34.93984 -32.33729 -31.46745 -30.19524 -27.93856 -25.54539 -23.33442 -22.45601 -21.72959 -19.35016 -17.71606 -16.52077 -16.42567 -15.58782 -15.02558 -14.86250 -14.20344 -13.75389 -13.11818 -12.78686 -12.36438 -12.19086 -11.85052 -11.47534 -11.34321 -11.01947 -10.58033 -10.18882 -9.94970 -9.70543 -9.19005 -8.83488 -8.59309 -7.66471 -6.95057 -6.35930 -4.22417 1.19708 1.55692 2.77697 3.27501 3.34469 3.36843 3.49376 3.88138 4.35792 4.65481 5.03610 5.12413 5.18852 5.26212 5.51046 5.82714 5.88434 6.01659 6.17704 6.34112 6.48429 6.60439 6.84193 7.00197 7.35135 7.40560 7.80472 8.08905 8.24012 8.38038 8.46134 8.84754 9.51572 10.84966 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.037412 B = 0.009702 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.238394 B = 2885.330723 C = 3208.896491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 1.047 2.953 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.286 1.286 7 C -0.615 4.615 8 H 0.055 0.945 9 C 0.245 3.755 10 H 0.046 0.954 11 N -0.851 5.851 12 C -0.163 4.163 13 C 0.078 3.922 14 N -0.334 5.334 15 N -0.283 5.283 16 C 0.101 3.899 17 C -0.170 4.170 18 C -0.117 4.117 19 C -0.079 4.079 20 C 0.079 3.921 21 H 0.268 0.732 22 H 0.322 0.678 23 H 0.329 0.671 24 H 0.185 0.815 25 H 0.157 0.843 26 H 0.145 0.855 27 H 0.133 0.867 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.599 -6.023 -5.032 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.876 3.124 4 H -0.207 1.207 5 H -0.201 1.201 6 H -0.213 1.213 7 C -0.655 4.655 8 H 0.073 0.927 9 C 0.135 3.865 10 H 0.063 0.937 11 N -0.381 5.381 12 C -0.175 4.175 13 C -0.097 4.097 14 N -0.159 5.159 15 N -0.052 5.052 16 C -0.024 4.024 17 C -0.193 4.193 18 C -0.140 4.140 19 C -0.099 4.099 20 C -0.038 4.038 21 H 0.078 0.922 22 H 0.135 0.865 23 H 0.140 0.860 24 H 0.202 0.798 25 H 0.175 0.825 26 H 0.162 0.838 27 H 0.150 0.850 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.562 -5.751 -4.764 12.935 hybrid contribution -1.333 -0.858 -0.163 1.594 sum 9.229 -6.609 -4.927 12.375 Atomic orbital electron populations 1.70796 1.06776 1.30760 1.45803 1.25850 0.96449 1.02408 0.93148 0.83934 0.75364 0.75643 0.77506 1.20705 1.20060 1.21269 1.22737 0.91783 0.95247 1.55709 0.92711 1.17745 0.93802 0.86648 0.88314 0.93671 1.59583 1.66228 1.06320 1.05951 1.20280 1.08554 0.99685 0.88947 1.23502 0.95954 0.89731 1.00474 1.77694 1.31194 1.23527 0.83482 1.46058 1.42941 1.10254 1.05994 1.21249 0.99750 0.95306 0.86083 1.20645 1.06097 0.98230 0.94307 1.20962 0.99921 0.93441 0.99663 1.20700 0.98862 1.01156 0.89177 1.19256 1.02782 0.86395 0.95415 0.92172 0.86475 0.86020 0.79784 0.82515 0.83778 0.84954 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.36 13.70 55.43 0.76 -26.60 15 2 C 0.03 0.75 5.46 -17.82 -0.10 0.65 15 3 Si 1.05 24.26 25.54 -169.99 -4.34 19.91 15 4 H -0.28 -6.08 6.93 56.52 0.39 -5.69 15 5 H -0.27 -5.99 6.37 56.52 0.36 -5.63 15 6 H -0.29 -6.71 7.11 56.52 0.40 -6.30 15 7 C -0.61 -16.90 9.07 -34.44 -0.31 -17.21 15 8 H 0.05 1.68 7.98 -52.48 -0.42 1.26 15 9 C 0.25 5.84 2.69 -70.02 -0.19 5.65 15 10 H 0.05 1.11 6.62 -51.93 -0.34 0.76 15 11 N -0.85 -18.41 8.93 -6.65 -0.06 -18.47 15 12 C -0.16 -3.66 5.24 -104.25 -0.55 -4.20 15 13 C 0.08 1.62 11.21 -17.58 -0.20 1.42 15 14 N -0.33 -6.81 12.66 30.46 0.39 -6.43 15 15 N -0.28 -5.44 3.90 -10.71 -0.04 -5.48 15 16 C 0.10 1.48 11.19 -16.63 -0.19 1.29 15 17 C -0.17 -2.12 9.98 -39.91 -0.40 -2.51 15 18 C -0.12 -1.61 10.07 -39.52 -0.40 -2.01 15 19 C -0.08 -1.40 10.09 -39.40 -0.40 -1.79 15 20 C 0.08 1.63 6.76 -84.27 -0.57 1.06 15 21 H 0.27 8.16 8.72 -40.82 -0.36 7.80 15 22 H 0.32 6.93 5.47 -39.29 -0.22 6.71 15 23 H 0.33 6.78 8.10 -39.29 -0.32 6.46 15 24 H 0.19 3.34 7.46 -52.49 -0.39 2.94 15 25 H 0.16 1.78 8.06 -52.48 -0.42 1.36 15 26 H 0.14 1.21 8.06 -52.49 -0.42 0.79 15 27 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 28 H 0.15 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 243.47 15.07 3.67 3.67 Total: -1.00 -32.04 243.47 -5.50 -37.54 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -2.58 Total: 13.51 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -3.29 Total: -17.65 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 1.04 Total: -56.98 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -4.34 Total: 19.91 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.04 -5.50 -37.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378284.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.190 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds