Wall clock time and date at job start Mon Mar 30 2020 02:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00158 * 2 1 4 4 H 1.48492 * 109.47491 * 89.99729 * 3 2 1 5 5 H 1.48504 * 109.46923 * 210.00100 * 3 2 1 6 6 H 1.48502 * 109.46785 * 329.99622 * 3 2 1 7 7 C 1.37875 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99790 * 6.64291 * 7 2 1 9 9 C 1.50702 * 119.99840 * 186.63803 * 7 2 1 10 10 H 1.08998 * 109.46680 * 305.17475 * 9 7 2 11 11 N 1.46898 * 109.46918 * 65.18127 * 9 7 2 12 12 C 1.50703 * 109.46574 * 185.18323 * 9 7 2 13 13 C 1.38550 * 126.21193 * 264.68220 * 12 9 7 14 14 N 1.31487 * 109.00500 * 179.88325 * 13 12 9 15 15 N 1.40042 * 108.91658 * 0.39222 * 14 13 12 16 16 C 1.36532 * 132.43650 * 179.75944 * 15 14 13 17 17 C 1.34930 * 120.66320 * 179.97438 * 16 15 14 18 18 C 1.40479 * 120.43009 * 0.02562 * 17 16 15 19 19 C 1.36061 * 119.58876 * 359.97438 * 18 17 16 20 20 C 1.37133 * 107.44178 * 359.75255 * 15 14 13 21 21 H 0.96995 * 120.00519 * 174.93569 * 1 2 3 22 22 H 1.00897 * 111.00041 * 293.80022 * 11 9 7 23 23 H 1.00900 * 111.00023 * 57.76152 * 11 9 7 24 24 H 1.08002 * 125.49564 * 0.02562 * 13 12 9 25 25 H 1.08005 * 119.66733 * 359.97011 * 16 15 14 26 26 H 1.07997 * 119.78592 * 180.02562 * 17 16 15 27 27 H 1.07996 * 120.20313 * 180.02562 * 18 17 16 28 28 H 1.08001 * 120.38828 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4698 -2.1263 -0.1073 9 6 3.5039 -1.1984 0.1514 10 1 3.9478 -0.5603 -0.6127 11 7 3.8636 -0.6915 1.4824 12 6 4.0205 -2.6053 -0.0070 13 6 4.2872 -3.4994 1.0172 14 7 4.7202 -4.6276 0.4988 15 7 4.7588 -4.5012 -0.8954 16 6 5.1295 -5.3617 -1.8885 17 6 5.0711 -4.9849 -3.1828 18 6 4.6275 -3.6979 -3.5299 19 6 4.2547 -2.8292 -2.5513 20 6 4.3218 -3.2390 -1.2060 21 1 -0.4851 -0.8367 -0.0741 22 1 3.6178 0.2825 1.5770 23 1 3.4339 -1.2451 2.2084 24 1 4.1579 -3.3025 2.0712 25 1 5.4729 -6.3539 -1.6356 26 1 5.3673 -5.6771 -3.9570 27 1 4.5818 -3.4003 -4.5670 28 1 3.9112 -1.8368 -2.8036 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260378284.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:36 Heat of formation + Delta-G solvation = 79.507919 kcal Electronic energy + Delta-G solvation = -14082.073304 eV Core-core repulsion = 11712.801963 eV Total energy + Delta-G solvation = -2369.271341 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.84009 -38.25953 -36.73658 -34.12975 -33.15347 -31.54956 -29.41800 -27.50716 -24.60592 -24.08733 -23.28076 -20.95314 -19.82716 -17.92974 -17.81938 -16.91754 -16.48736 -16.33555 -15.54473 -15.54381 -14.88182 -14.58638 -14.24669 -13.62890 -13.44392 -12.86535 -12.68044 -12.58576 -12.22809 -11.89251 -11.48925 -11.35485 -11.15406 -10.73967 -10.19366 -9.55267 -8.82545 -8.17157 -6.48119 -0.04608 0.22150 1.41979 1.46379 1.51869 1.68295 1.85114 2.41425 2.55786 3.02340 3.37586 3.81984 3.96517 4.06861 4.18804 4.28491 4.58216 4.64150 4.77889 4.83768 5.11974 5.27682 5.44533 5.58934 5.68981 5.80520 5.94200 6.06204 6.39549 6.49619 6.69461 6.80259 7.35184 8.57868 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.037412 B = 0.009702 C = 0.008724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.238394 B = 2885.330723 C = 3208.896491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.022 4.022 3 Si 1.087 2.913 4 H -0.252 1.252 5 H -0.253 1.253 6 H -0.288 1.288 7 C -0.609 4.609 8 H 0.005 0.995 9 C 0.259 3.741 10 H 0.039 0.961 11 N -0.838 5.838 12 C -0.224 4.224 13 C 0.072 3.928 14 N -0.357 5.357 15 N -0.285 5.285 16 C 0.079 3.921 17 C -0.148 4.148 18 C -0.079 4.079 19 C -0.131 4.131 20 C 0.074 3.926 21 H 0.249 0.751 22 H 0.324 0.676 23 H 0.334 0.666 24 H 0.197 0.803 25 H 0.192 0.808 26 H 0.201 0.799 27 H 0.176 0.824 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.839 -6.745 -6.952 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.219 4.219 3 Si 0.908 3.092 4 H -0.177 1.177 5 H -0.178 1.178 6 H -0.215 1.215 7 C -0.649 4.649 8 H 0.024 0.976 9 C 0.148 3.852 10 H 0.057 0.943 11 N -0.368 5.368 12 C -0.235 4.235 13 C -0.101 4.101 14 N -0.182 5.182 15 N -0.054 5.054 16 C -0.045 4.045 17 C -0.170 4.170 18 C -0.102 4.102 19 C -0.151 4.151 20 C -0.045 4.045 21 H 0.058 0.942 22 H 0.138 0.862 23 H 0.145 0.855 24 H 0.213 0.787 25 H 0.209 0.791 26 H 0.218 0.782 27 H 0.193 0.807 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.819 -6.512 -6.661 15.847 hybrid contribution -1.984 -0.870 0.185 2.175 sum 10.835 -7.383 -6.476 14.623 Atomic orbital electron populations 1.70938 1.08107 1.29606 1.48839 1.27328 0.96283 1.06256 0.92081 0.83464 0.74937 0.71419 0.79395 1.17701 1.17764 1.21484 1.22863 0.94200 0.93163 1.54627 0.97647 1.17417 0.90802 0.88142 0.88839 0.94345 1.59513 1.65727 1.06442 1.05129 1.20203 1.12956 0.99706 0.90641 1.23658 0.95839 0.89684 1.00953 1.77594 1.32761 1.23419 0.84471 1.46375 1.42296 1.10407 1.06275 1.22228 0.99776 0.96339 0.86173 1.21386 1.02851 0.98159 0.94556 1.21600 0.94974 0.92835 1.00798 1.20852 1.02844 1.02410 0.88970 1.19618 1.01694 0.86955 0.96238 0.94161 0.86248 0.85463 0.78678 0.79145 0.78170 0.80651 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.77 13.70 21.45 0.29 -58.47 15 2 C -0.02 -1.23 5.46 84.65 0.46 -0.77 15 3 Si 1.09 48.68 25.54 68.60 1.75 50.43 15 4 H -0.25 -10.14 6.93 99.48 0.69 -9.45 15 5 H -0.25 -10.40 6.37 99.48 0.63 -9.77 15 6 H -0.29 -12.99 7.11 99.48 0.71 -12.29 15 7 C -0.61 -34.91 9.07 25.60 0.23 -34.68 15 8 H 0.01 0.34 7.98 -2.91 -0.02 0.31 15 9 C 0.26 12.61 2.69 43.42 0.12 12.72 15 10 H 0.04 1.90 6.62 -2.39 -0.02 1.89 15 11 N -0.84 -36.26 8.93 -174.95 -1.56 -37.82 15 12 C -0.22 -10.30 5.24 -19.62 -0.10 -10.40 15 13 C 0.07 3.08 11.21 84.82 0.95 4.03 15 14 N -0.36 -14.63 12.66 -57.54 -0.73 -15.36 15 15 N -0.29 -10.66 3.90 -187.79 -0.73 -11.40 15 16 C 0.08 2.02 11.19 83.20 0.93 2.95 15 17 C -0.15 -2.86 9.98 22.06 0.22 -2.64 15 18 C -0.08 -1.84 10.07 22.31 0.22 -1.62 15 19 C -0.13 -4.48 10.09 22.39 0.23 -4.26 15 20 C 0.07 3.07 6.76 39.11 0.26 3.34 15 21 H 0.25 16.08 8.72 -92.71 -0.81 15.27 15 22 H 0.32 13.59 5.47 -89.70 -0.49 13.10 15 23 H 0.33 13.93 8.10 -89.69 -0.73 13.20 15 24 H 0.20 7.34 7.46 -2.91 -0.02 7.32 15 25 H 0.19 3.49 8.06 -2.91 -0.02 3.46 15 26 H 0.20 1.72 8.06 -2.91 -0.02 1.70 15 27 H 0.18 2.59 8.06 -2.91 -0.02 2.57 15 28 H 0.14 4.76 8.06 -2.91 -0.02 4.74 15 Total: -1.00 -74.27 243.47 2.40 -71.88 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: -0.15 Total: 32.06 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 3.53 Total: -31.32 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -2.73 Total: -123.05 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 1.75 Total: 50.43 kcal Total: -74.27 2.40 -71.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260378284.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.384 kcal (2) G-P(sol) polarization free energy of solvation -74.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds