Wall clock time and date at job start Mon Mar 30 2020 03:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47113 * 2 1 4 4 C 1.50696 * 109.47580 * 120.00443 * 2 1 3 5 5 H 1.07993 * 120.00251 * 119.99764 * 4 2 1 6 6 C 1.37876 * 119.99840 * 300.00148 * 4 2 1 7 7 N 1.31513 * 120.00040 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00028 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47077 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47102 * 119.99966 * 8 6 4 11 11 H 1.48500 * 109.47212 * 239.99841 * 8 6 4 12 12 C 1.50708 * 109.46931 * 240.00768 * 2 1 3 13 13 C 1.40268 * 120.18720 * 300.01474 * 12 2 1 14 14 C 1.35185 * 120.21604 * 179.97438 * 13 12 2 15 15 N 1.35930 * 120.56926 * 0.02562 * 14 13 12 16 16 N 1.40201 * 133.19915 * 180.33447 * 15 14 13 17 17 C 1.31252 * 107.09808 * 180.02562 * 16 15 14 18 18 N 1.32512 * 109.63836 * 359.62306 * 17 16 15 19 19 C 1.32850 * 109.67599 * 0.24328 * 18 17 16 20 20 C 1.36184 * 120.18901 * 119.99840 * 12 2 1 21 21 H 1.08997 * 109.46937 * 299.99690 * 1 2 3 22 22 H 1.08996 * 109.47427 * 59.99667 * 1 2 3 23 23 H 1.08998 * 109.46852 * 179.97438 * 1 2 3 24 24 H 0.97002 * 119.99980 * 180.02562 * 7 6 4 25 25 H 1.08005 * 119.89217 * 359.96108 * 13 12 2 26 26 H 1.08005 * 119.71678 * 180.02562 * 14 13 12 27 27 H 1.08002 * 125.18537 * 179.89393 * 17 16 15 28 28 H 1.07998 * 120.37240 * 0.04384 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9436 0.8300 2.6034 8 14 2.3216 -1.1206 4.0078 9 1 3.1468 -2.2872 3.6035 10 1 3.1468 -0.1876 4.8164 11 1 1.1663 -1.5870 4.8160 12 6 2.0323 -0.7103 -1.2306 13 6 1.6956 -2.0530 -1.4568 14 6 2.1454 -2.6906 -2.5608 15 7 2.9278 -2.0417 -3.4633 16 7 3.5229 -2.4298 -4.6719 17 6 4.1777 -1.3892 -5.1313 18 7 4.0305 -0.3678 -4.3000 19 6 3.2730 -0.7336 -3.2717 20 6 2.8155 -0.0520 -2.1295 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7096 1.1615 3.4845 25 1 1.0751 -2.5793 -0.7466 26 1 1.8808 -3.7244 -2.7271 27 1 4.7460 -1.3672 -6.0495 28 1 3.0825 0.9817 -1.9672 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260444202.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:44 Heat of formation + Delta-G solvation = 93.303615 kcal Electronic energy + Delta-G solvation = -13883.335157 eV Core-core repulsion = 11514.662042 eV Total energy + Delta-G solvation = -2368.673115 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.57176 -39.34961 -36.27751 -34.37791 -32.80624 -31.11330 -30.21528 -27.19299 -24.90668 -24.78323 -23.08395 -21.66009 -18.77673 -18.53201 -17.49789 -17.07832 -16.96849 -15.98952 -15.68393 -15.17245 -14.62021 -13.94836 -13.76610 -13.49224 -13.19726 -12.85608 -12.75408 -12.46757 -12.26473 -12.10847 -11.84583 -11.50946 -11.13796 -10.99739 -10.46408 -10.23135 -9.14159 -8.09264 -6.23198 -0.15345 0.01853 1.21630 1.44841 1.49352 1.58193 1.79413 2.41690 2.55124 3.07827 3.21352 3.29320 3.85179 3.97793 4.21513 4.41276 4.51632 4.88888 4.94446 5.10825 5.18083 5.25472 5.38649 5.45032 5.48641 5.64913 5.81862 5.93364 6.07584 6.29953 6.85000 6.98917 7.45682 8.95615 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.049773 B = 0.007404 C = 0.007205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.414132 B = 3780.894453 C = 3885.417577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.070 3.930 3 H 0.015 0.985 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.952 3.048 9 H -0.267 1.267 10 H -0.287 1.287 11 H -0.279 1.279 12 C 0.021 3.979 13 C -0.130 4.130 14 C 0.102 3.898 15 N -0.299 5.299 16 N -0.377 5.377 17 C 0.233 3.767 18 N -0.589 5.589 19 C 0.275 3.725 20 C -0.150 4.150 21 H 0.063 0.937 22 H 0.026 0.974 23 H 0.046 0.954 24 H 0.262 0.738 25 H 0.178 0.822 26 H 0.204 0.796 27 H 0.262 0.738 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -6.183 -8.121 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 H 0.033 0.967 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.214 1.214 11 H -0.205 1.205 12 C 0.013 3.987 13 C -0.152 4.152 14 C -0.024 4.024 15 N -0.072 5.072 16 N -0.209 5.209 17 C -0.067 4.067 18 N -0.321 5.321 19 C 0.024 3.976 20 C -0.172 4.172 21 H 0.082 0.918 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.196 0.804 26 H 0.221 0.779 27 H 0.278 0.722 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.081 -6.445 -8.569 10.777 hybrid contribution 0.255 0.079 1.144 1.175 sum 1.335 -6.367 -7.425 9.872 Atomic orbital electron populations 1.21652 0.96130 1.00351 1.00170 1.17862 0.93968 0.94496 0.88491 0.96652 1.21303 1.31458 1.12720 0.90463 0.92188 1.25618 0.95111 0.95550 1.01604 1.70001 1.37306 1.23823 1.24109 0.85590 0.78139 0.78696 0.79723 1.19089 1.21371 1.20514 1.20619 0.89981 0.94162 0.93927 1.21191 1.02434 0.94609 0.96936 1.22050 0.92338 1.00411 0.87651 1.47802 1.32908 1.10385 1.16147 1.78329 1.21993 1.24337 0.96229 1.26881 0.95218 0.84709 0.99917 1.70867 1.24658 1.31303 1.05275 1.21893 0.95211 0.84250 0.96285 1.20198 1.03334 1.01765 0.91872 0.91841 0.95488 0.93477 0.92836 0.80434 0.77875 0.72229 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.33 8.79 71.98 0.63 -4.70 15 2 C 0.07 3.17 2.48 -12.28 -0.03 3.14 15 3 H 0.02 0.77 7.87 -2.39 -0.02 0.75 15 4 C -0.52 -25.61 8.26 25.60 0.21 -25.40 15 5 H 0.06 2.89 7.61 -2.91 -0.02 2.87 15 6 C 0.02 1.05 5.30 84.65 0.45 1.50 15 7 N -0.91 -48.81 11.32 21.45 0.24 -48.57 15 8 Si 0.95 40.52 29.54 68.60 2.03 42.54 15 9 H -0.27 -10.99 7.11 99.48 0.71 -10.29 15 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 15 11 H -0.28 -11.65 7.11 99.48 0.71 -10.94 15 12 C 0.02 0.80 4.72 -19.85 -0.09 0.71 15 13 C -0.13 -4.08 8.71 22.06 0.19 -3.88 15 14 C 0.10 2.89 11.20 83.35 0.93 3.83 15 15 N -0.30 -10.17 3.90 -192.95 -0.75 -10.92 15 16 N -0.38 -12.21 12.78 -61.37 -0.78 -13.00 15 17 C 0.23 6.86 12.98 180.83 2.35 9.21 15 18 N -0.59 -21.30 11.25 -198.18 -2.23 -23.53 15 19 C 0.27 10.30 7.88 134.09 1.06 11.35 15 20 C -0.15 -5.70 9.72 22.38 0.22 -5.49 15 21 H 0.06 3.07 6.07 -2.39 -0.01 3.06 15 22 H 0.03 1.02 8.14 -2.39 -0.02 1.01 15 23 H 0.05 1.81 7.42 -2.39 -0.02 1.79 15 24 H 0.26 13.42 8.31 -92.71 -0.77 12.65 15 25 H 0.18 4.96 7.62 -2.91 -0.02 4.94 15 26 H 0.20 4.02 8.06 -2.91 -0.02 4.00 15 27 H 0.26 4.72 8.06 -2.91 -0.02 4.70 15 28 H 0.15 5.48 7.94 -2.91 -0.02 5.46 15 Total: -1.00 -60.45 247.27 5.58 -54.87 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.17 Total: 8.34 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 5.92 Total: -9.73 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -3.52 Total: -96.01 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.54 kcal Total: -60.45 5.58 -54.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260444202.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.172 kcal (2) G-P(sol) polarization free energy of solvation -60.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds