Wall clock time and date at job start Mon Mar 30 2020 03:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36664 * 126.38626 * 2 1 4 4 N 1.37827 * 125.08555 * 359.97438 * 3 2 1 5 5 C 1.36953 * 120.00281 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00394 * 359.97438 * 5 4 3 7 7 C 1.38803 * 119.99867 * 179.71932 * 5 4 3 8 8 N 1.31554 * 120.00144 * 0.27510 * 7 5 4 9 9 Si 1.86803 * 120.00005 * 180.27678 * 7 5 4 10 10 H 1.48498 * 109.47174 * 90.00123 * 9 7 5 11 11 H 1.48501 * 109.47062 * 210.00074 * 9 7 5 12 12 H 1.48495 * 109.46833 * 329.99696 * 9 7 5 13 13 N 1.31055 * 109.84061 * 180.24233 * 3 2 1 14 14 C 1.35713 * 109.62679 * 359.56708 * 13 3 2 15 15 C 1.39816 * 133.38844 * 180.14759 * 14 13 3 16 16 C 1.37633 * 119.77082 * 180.32624 * 15 14 13 17 17 C 1.38748 * 120.51701 * 0.02562 * 16 15 14 18 18 C 1.37951 * 120.45007 * 359.97438 * 17 16 15 19 19 C 1.38398 * 126.38981 * 179.97438 * 2 1 3 20 20 H 1.09007 * 109.46959 * 90.02191 * 1 2 3 21 21 H 1.09000 * 109.47344 * 210.02243 * 1 2 3 22 22 H 1.08995 * 109.47185 * 330.02296 * 1 2 3 23 23 H 0.97000 * 119.99342 * 359.97438 * 4 3 2 24 24 H 0.96996 * 120.00417 * 179.97438 * 8 7 5 25 25 H 1.08004 * 120.10956 * 0.34545 * 15 14 13 26 26 H 1.07997 * 119.73936 * 180.02562 * 16 15 14 27 27 H 1.08000 * 119.77649 * 180.02562 * 17 16 15 28 28 H 1.07997 * 120.06744 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2757 1.1002 0.0000 4 7 1.8377 2.4070 -0.0005 5 6 2.7446 3.4332 0.0001 6 1 3.8031 3.2186 0.0014 7 6 2.3035 4.7493 -0.0063 8 7 1.0142 5.0109 -0.0075 9 14 3.5405 6.1490 -0.0133 10 1 3.8681 6.5131 -1.4152 11 1 2.9598 7.3263 0.6810 12 1 4.7768 5.7204 0.6887 13 7 3.5320 0.7270 -0.0052 14 6 3.6049 -0.6282 0.0008 15 6 4.6712 -1.5326 0.0018 16 6 4.4195 -2.8857 0.0019 17 6 3.1156 -3.3599 0.0006 18 6 2.0522 -2.4811 -0.0004 19 6 2.2860 -1.1141 0.0005 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8901 0.5134 23 1 0.8871 2.5998 -0.0013 24 1 0.7059 5.9305 -0.0116 25 1 5.6887 -1.1706 0.0027 26 1 5.2435 -3.5839 0.0031 27 1 2.9318 -4.4241 0.0012 28 1 1.0397 -2.8569 -0.0010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260521526.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:26 Heat of formation + Delta-G solvation = 79.864535 kcal Electronic energy + Delta-G solvation = -13835.909297 eV Core-core repulsion = 11466.653420 eV Total energy + Delta-G solvation = -2369.255877 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.05225 -36.87802 -34.87746 -33.28162 -31.58689 -29.72173 -27.71805 -26.30491 -24.82873 -21.49193 -21.34958 -19.59172 -18.09205 -16.63143 -16.27680 -15.56335 -15.13675 -14.50121 -13.85114 -13.52860 -13.35248 -13.07729 -12.76021 -12.27618 -11.73996 -11.61716 -11.30411 -11.06246 -10.75805 -10.47524 -10.35177 -9.96751 -9.52014 -8.70987 -8.55643 -7.48683 -6.76407 -6.55726 -3.82286 1.82210 2.24199 3.14295 3.16005 3.22842 3.33680 3.81768 4.11350 4.68182 4.76217 5.13393 5.16431 5.20644 5.51578 5.57581 5.63081 5.75541 6.05930 6.18123 6.22963 6.42742 6.79129 7.17117 7.18493 7.24812 7.41418 7.47565 7.69563 8.11800 8.59692 8.95048 9.22590 9.61763 10.62257 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.047745 B = 0.007752 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.304544 B = 3610.981282 C = 4182.136730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.539 5.539 3 C 0.522 3.478 4 N -0.532 5.532 5 C -0.278 4.278 6 H 0.113 0.887 7 C 0.017 3.983 8 N -0.905 5.905 9 Si 0.939 3.061 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.267 1.267 13 N -0.577 5.577 14 C 0.115 3.885 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.159 4.159 18 C -0.102 4.102 19 C 0.021 3.979 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.405 0.595 24 H 0.274 0.726 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 -9.547 0.104 9.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.242 5.242 3 C 0.169 3.831 4 N -0.153 5.153 5 C -0.408 4.408 6 H 0.130 0.870 7 C -0.185 4.185 8 N -0.545 5.545 9 Si 0.766 3.234 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.191 1.191 13 N -0.312 5.312 14 C -0.008 4.008 15 C -0.139 4.139 16 C -0.141 4.141 17 C -0.180 4.180 18 C -0.124 4.124 19 C -0.085 4.085 20 H 0.079 0.921 21 H 0.093 0.907 22 H 0.095 0.905 23 H 0.242 0.758 24 H 0.084 0.916 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.505 -8.538 0.102 8.554 hybrid contribution -0.926 0.361 -0.019 0.994 sum -1.431 -8.177 0.083 8.302 Atomic orbital electron populations 1.21659 0.78021 1.03398 1.02211 1.44760 1.05561 1.04519 1.69407 1.19796 0.84735 0.82359 0.96161 1.39777 1.09321 0.97883 1.68298 1.19790 0.90762 0.83344 1.46889 0.86962 1.25283 0.97059 0.98550 0.97616 1.69646 1.13096 1.21367 1.50360 0.85697 0.79799 0.79422 0.78514 1.20291 1.20878 1.19141 1.70812 1.13979 1.08854 1.37558 1.19057 0.91596 0.90646 0.99465 1.19974 0.96865 0.91341 1.05711 1.20590 0.96237 0.94442 1.02817 1.20413 0.92161 0.97947 1.07510 1.19654 0.98563 0.89021 1.05211 1.18552 0.91494 0.88429 1.10043 0.92079 0.90700 0.90485 0.75835 0.91630 0.86560 0.86847 0.86907 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 10.96 59.84 0.66 2.04 15 2 N -0.54 -11.07 3.23 -122.43 -0.40 -11.46 15 3 C 0.52 12.63 8.39 -319.87 -2.68 9.95 15 4 N -0.53 -13.34 5.40 -12.32 -0.07 -13.40 15 5 C -0.28 -7.44 9.78 -15.05 -0.15 -7.59 15 6 H 0.11 3.11 7.33 -52.49 -0.38 2.72 15 7 C 0.02 0.44 5.50 -17.46 -0.10 0.35 15 8 N -0.90 -23.93 13.05 55.49 0.72 -23.20 15 9 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 15 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 13 N -0.58 -14.63 10.51 -11.48 -0.12 -14.75 15 14 C 0.12 2.58 7.22 -84.69 -0.61 1.97 15 15 C -0.12 -2.22 10.10 -39.21 -0.40 -2.61 15 16 C -0.12 -1.92 10.01 -39.61 -0.40 -2.31 15 17 C -0.16 -2.45 10.03 -39.50 -0.40 -2.85 15 18 C -0.10 -1.73 10.04 -39.52 -0.40 -2.13 15 19 C 0.02 0.44 6.87 -83.86 -0.58 -0.14 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.08 1.15 7.45 -51.93 -0.39 0.76 15 23 H 0.41 9.76 7.05 -40.82 -0.29 9.47 15 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 15 25 H 0.12 2.05 8.06 -52.48 -0.42 1.63 15 26 H 0.11 1.44 8.06 -52.49 -0.42 1.02 15 27 H 0.11 1.38 8.06 -52.49 -0.42 0.96 15 28 H 0.11 1.49 8.06 -52.49 -0.42 1.07 15 LS Contribution 250.64 15.07 3.78 3.78 Total: -1.00 -29.57 250.64 -8.88 -38.45 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -2.73 Total: 8.43 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -5.05 Total: -3.32 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: 0.14 Total: -62.82 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.57 -8.88 -38.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521526.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.318 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds