Wall clock time and date at job start Mon Mar 30 2020 03:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36664 * 126.38626 * 2 1 4 4 N 1.37827 * 125.08555 * 359.97438 * 3 2 1 5 5 C 1.36953 * 120.00281 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00394 * 359.97438 * 5 4 3 7 7 C 1.38803 * 119.99867 * 179.71932 * 5 4 3 8 8 N 1.31554 * 120.00144 * 0.27510 * 7 5 4 9 9 Si 1.86803 * 120.00005 * 180.27678 * 7 5 4 10 10 H 1.48498 * 109.47174 * 90.00123 * 9 7 5 11 11 H 1.48501 * 109.47062 * 210.00074 * 9 7 5 12 12 H 1.48495 * 109.46833 * 329.99696 * 9 7 5 13 13 N 1.31055 * 109.84061 * 180.24233 * 3 2 1 14 14 C 1.35713 * 109.62679 * 359.56708 * 13 3 2 15 15 C 1.39816 * 133.38844 * 180.14759 * 14 13 3 16 16 C 1.37633 * 119.77082 * 180.32624 * 15 14 13 17 17 C 1.38748 * 120.51701 * 0.02562 * 16 15 14 18 18 C 1.37951 * 120.45007 * 359.97438 * 17 16 15 19 19 C 1.38398 * 126.38981 * 179.97438 * 2 1 3 20 20 H 1.09007 * 109.46959 * 90.02191 * 1 2 3 21 21 H 1.09000 * 109.47344 * 210.02243 * 1 2 3 22 22 H 1.08995 * 109.47185 * 330.02296 * 1 2 3 23 23 H 0.97000 * 119.99342 * 359.97438 * 4 3 2 24 24 H 0.96996 * 120.00417 * 179.97438 * 8 7 5 25 25 H 1.08004 * 120.10956 * 0.34545 * 15 14 13 26 26 H 1.07997 * 119.73936 * 180.02562 * 16 15 14 27 27 H 1.08000 * 119.77649 * 180.02562 * 17 16 15 28 28 H 1.07997 * 120.06744 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2757 1.1002 0.0000 4 7 1.8377 2.4070 -0.0005 5 6 2.7446 3.4332 0.0001 6 1 3.8031 3.2186 0.0014 7 6 2.3035 4.7493 -0.0063 8 7 1.0142 5.0109 -0.0075 9 14 3.5405 6.1490 -0.0133 10 1 3.8681 6.5131 -1.4152 11 1 2.9598 7.3263 0.6810 12 1 4.7768 5.7204 0.6887 13 7 3.5320 0.7270 -0.0052 14 6 3.6049 -0.6282 0.0008 15 6 4.6712 -1.5326 0.0018 16 6 4.4195 -2.8857 0.0019 17 6 3.1156 -3.3599 0.0006 18 6 2.0522 -2.4811 -0.0004 19 6 2.2860 -1.1141 0.0005 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8901 0.5134 23 1 0.8871 2.5998 -0.0013 24 1 0.7059 5.9305 -0.0116 25 1 5.6887 -1.1706 0.0027 26 1 5.2435 -3.5839 0.0031 27 1 2.9318 -4.4241 0.0012 28 1 1.0397 -2.8569 -0.0010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260521526.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:26 Heat of formation + Delta-G solvation = 63.714199 kcal Electronic energy + Delta-G solvation = -13836.609628 eV Core-core repulsion = 11466.653420 eV Total energy + Delta-G solvation = -2369.956208 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.64386 -38.39540 -36.59483 -34.82990 -33.44211 -31.10963 -29.28182 -27.72405 -26.67069 -23.02480 -22.84991 -21.19213 -19.89118 -18.28874 -17.74159 -17.13388 -16.68046 -16.23809 -15.54275 -15.05684 -14.73253 -14.56850 -14.12930 -13.54191 -13.45145 -13.39225 -12.71622 -12.61079 -12.46096 -12.11665 -12.06958 -11.57318 -11.08049 -10.40657 -10.35598 -8.92899 -8.47128 -8.44479 -5.80454 0.36439 0.82090 1.41295 1.43717 1.53223 1.73061 2.17254 2.35486 3.07867 3.09563 3.27120 3.76209 3.93460 4.28055 4.36919 4.38022 4.57635 4.64432 4.76786 4.85503 5.07904 5.30630 5.41180 5.64451 5.73100 5.80480 5.95749 6.24695 6.41241 6.75809 7.12515 7.38214 7.82362 8.71912 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.047745 B = 0.007752 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.304544 B = 3610.981282 C = 4182.136730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.535 5.535 3 C 0.509 3.491 4 N -0.553 5.553 5 C -0.299 4.299 6 H 0.091 0.909 7 C -0.023 4.023 8 N -0.932 5.932 9 Si 1.000 3.000 10 H -0.273 1.273 11 H -0.274 1.274 12 H -0.270 1.270 13 N -0.619 5.619 14 C 0.057 3.943 15 C -0.128 4.128 16 C -0.112 4.112 17 C -0.136 4.136 18 C -0.103 4.103 19 C 0.006 3.994 20 H 0.076 0.924 21 H 0.108 0.892 22 H 0.075 0.925 23 H 0.405 0.595 24 H 0.276 0.724 25 H 0.118 0.882 26 H 0.155 0.845 27 H 0.161 0.839 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -12.539 0.102 12.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.237 5.237 3 C 0.155 3.845 4 N -0.178 5.178 5 C -0.429 4.429 6 H 0.109 0.891 7 C -0.221 4.221 8 N -0.574 5.574 9 Si 0.823 3.177 10 H -0.198 1.198 11 H -0.199 1.199 12 H -0.194 1.194 13 N -0.355 5.355 14 C -0.062 4.062 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.156 4.156 18 C -0.125 4.125 19 C -0.101 4.101 20 H 0.094 0.906 21 H 0.126 0.874 22 H 0.094 0.906 23 H 0.241 0.759 24 H 0.085 0.915 25 H 0.136 0.864 26 H 0.172 0.828 27 H 0.178 0.822 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.668 -11.633 0.099 11.652 hybrid contribution -0.795 0.844 -0.021 1.160 sum -1.463 -10.788 0.078 10.888 Atomic orbital electron populations 1.21995 0.75179 1.04997 1.03694 1.44970 1.07232 1.03501 1.68042 1.19910 0.85476 0.82941 0.96178 1.39564 1.08819 0.98002 1.71366 1.19704 0.90268 0.84589 1.48385 0.89117 1.26011 0.98781 1.00065 0.97290 1.69721 1.14200 1.21753 1.51711 0.84808 0.77556 0.76768 0.78533 1.19827 1.19871 1.19441 1.70653 1.15521 1.11336 1.38024 1.19568 0.94001 0.90002 1.02669 1.20329 0.96415 0.92607 1.05647 1.21099 0.98217 0.93437 1.00442 1.21076 0.91212 1.00105 1.03243 1.20168 1.01058 0.87318 1.03917 1.19023 0.90651 0.89787 1.10632 0.90592 0.87352 0.90639 0.75903 0.91480 0.86434 0.82783 0.82171 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.96 127.77 1.40 3.83 15 2 N -0.54 -21.91 3.23 -541.26 -1.75 -23.66 15 3 C 0.51 25.63 8.39 260.46 2.19 27.82 15 4 N -0.55 -29.19 5.40 -192.90 -1.04 -30.23 15 5 C -0.30 -16.92 9.78 84.03 0.82 -16.09 15 6 H 0.09 5.37 7.33 -2.91 -0.02 5.35 15 7 C -0.02 -1.22 5.50 84.87 0.47 -0.75 15 8 N -0.93 -50.82 13.05 21.65 0.28 -50.54 15 9 Si 1.00 43.29 29.55 68.60 2.03 45.31 15 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 12 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 13 N -0.62 -32.82 10.51 -190.24 -2.00 -34.82 15 14 C 0.06 2.60 7.22 39.49 0.29 2.88 15 15 C -0.13 -4.73 10.10 22.51 0.23 -4.50 15 16 C -0.11 -3.08 10.01 22.25 0.22 -2.85 15 17 C -0.14 -3.41 10.03 22.32 0.22 -3.18 15 18 C -0.10 -3.05 10.04 22.31 0.22 -2.82 15 19 C 0.01 0.22 6.87 38.78 0.27 0.49 15 20 H 0.08 2.00 8.14 -2.38 -0.02 1.98 15 21 H 0.11 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.07 2.24 7.45 -2.39 -0.02 2.22 15 23 H 0.40 20.55 7.05 -92.71 -0.65 19.89 15 24 H 0.28 14.13 8.31 -92.71 -0.77 13.36 15 25 H 0.12 4.13 8.06 -2.91 -0.02 4.11 15 26 H 0.15 3.01 8.06 -2.91 -0.02 2.98 15 27 H 0.16 2.63 8.06 -2.91 -0.02 2.61 15 28 H 0.14 3.16 8.06 -2.91 -0.02 3.14 15 Total: -1.00 -67.78 250.64 4.37 -63.41 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.52 Total: 25.72 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 6.33 Total: 4.81 kcal Atomic # 7 Polarization: -134.75 SS G_CDS: -4.51 Total: -139.25 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -67.78 4.37 -63.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260521526.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.128 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds