Wall clock time and date at job start Mon Mar 30 2020 02:46:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30810 * 126.24631 * 2 1
4 4 N 1.28683 * 110.28825 * 180.02562 * 3 2 1
5 5 C 1.32308 * 109.48724 * 359.71164 * 4 3 2
6 6 C 1.40810 * 133.46424 * 179.47992 * 5 4 3
7 7 C 1.36027 * 119.22273 * 180.50282 * 6 5 4
8 8 C 1.40542 * 119.74982 * 0.27289 * 7 6 5
9 9 C 1.34955 * 120.36489 * 0.02562 * 8 7 6
10 10 C 1.50707 * 119.74320 * 179.97438 * 9 8 7
11 11 C 1.50704 * 109.46872 * 87.75823 * 10 9 8
12 12 H 1.07996 * 120.00155 * 359.97438 * 11 10 9
13 13 C 1.37878 * 119.99842 * 179.97438 * 11 10 9
14 14 N 1.31519 * 119.99555 * 359.97438 * 13 11 10
15 15 Si 1.86797 * 120.00176 * 180.02562 * 13 11 10
16 16 H 1.48505 * 109.47134 * 89.99458 * 15 13 11
17 17 H 1.48499 * 109.47402 * 209.99849 * 15 13 11
18 18 H 1.48501 * 109.46846 * 330.00264 * 15 13 11
19 19 N 1.36058 * 126.25005 * 180.02562 * 2 1 3
20 20 H 1.09001 * 109.47050 * 261.65870 * 1 2 3
21 21 H 1.09001 * 109.47285 * 21.65133 * 1 2 3
22 22 H 1.08999 * 109.47308 * 141.65441 * 1 2 3
23 23 H 1.07993 * 120.39021 * 0.77252 * 6 5 4
24 24 H 1.08007 * 120.12004 * 180.25564 * 7 6 5
25 25 H 1.08002 * 119.81534 * 180.02562 * 8 7 6
26 26 H 1.08997 * 109.47025 * 207.75519 * 10 9 8
27 27 H 1.08997 * 109.46971 * 327.76268 * 10 9 8
28 28 H 0.97002 * 119.99106 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2804 1.0550 0.0000
4 7 3.5176 0.7012 -0.0005
5 6 3.5991 -0.6194 0.0054
6 6 4.6787 -1.5233 -0.0017
7 6 4.4258 -2.8599 -0.0025
8 6 3.0972 -3.3182 -0.0022
9 6 2.0726 -2.4400 -0.0016
10 6 0.6533 -2.9469 -0.0018
11 6 0.1991 -3.1691 1.4179
12 1 0.8710 -2.9642 2.2382
13 6 -1.0743 -3.6341 1.6694
14 7 -1.8927 -3.8831 0.6704
15 14 -1.6377 -3.9088 3.4291
16 1 -2.2570 -2.6639 3.9507
17 1 -2.6339 -5.0095 3.4638
18 1 -0.4699 -4.2712 4.2718
19 7 2.3115 -1.0972 -0.0005
20 1 -0.3633 -0.1491 1.0168
21 1 -0.3634 0.9552 -0.3792
22 1 -0.3634 -0.8060 -0.6375
23 1 5.6956 -1.1598 -0.0020
24 1 5.2430 -3.5661 -0.0037
25 1 2.8952 -4.3792 -0.0024
26 1 0.0053 -2.2124 -0.4799
27 1 0.6036 -3.8874 -0.5506
28 1 -2.7887 -4.2099 0.8475
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260627320.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:46:45
Heat of formation + Delta-G solvation = 95.689244 kcal
Electronic energy + Delta-G solvation = -14224.208363 eV
Core-core repulsion = 11855.638697 eV
Total energy + Delta-G solvation = -2368.569666 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 217.091 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.97652 -37.85843 -34.51483 -33.02277 -31.31815 -30.64063 -28.40910 -26.18585
-24.04482 -22.83953 -22.48585 -19.98119 -17.51755 -16.82012 -16.26836 -15.86287
-15.24439 -14.79613 -13.68380 -13.35750 -12.84063 -12.77005 -12.49120 -12.09594
-11.84688 -11.60937 -11.21517 -11.18746 -10.83163 -10.65168 -10.54077 -10.23149
-9.81367 -9.67672 -8.90118 -8.68229 -7.34331 -6.33176 -4.40368 1.20664
1.65420 2.90365 3.15139 3.22345 3.24038 3.28230 3.84061 4.22544
4.58148 4.98247 5.03826 5.11079 5.28633 5.34173 5.43223 5.94532
6.01965 6.05385 6.26172 6.37801 6.52758 6.56765 6.62181 6.87988
7.04818 7.20957 7.56455 7.59742 7.88085 8.62316 9.06137 9.25838
10.75467
Molecular weight = 217.09amu
Principal moments of inertia in cm(-1)
A = 0.033196 B = 0.010167 C = 0.008814
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 843.265710 B = 2753.366576 C = 3176.012549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 C 0.161 3.839
3 N -0.271 5.271
4 N -0.314 5.314
5 C 0.191 3.809
6 C -0.125 4.125
7 C -0.066 4.066
8 C -0.181 4.181
9 C 0.160 3.840
10 C 0.037 3.963
11 C -0.522 4.522
12 H 0.058 0.942
13 C 0.068 3.932
14 N -0.886 5.886
15 Si 0.898 3.102
16 H -0.277 1.277
17 H -0.283 1.283
18 H -0.272 1.272
19 N -0.382 5.382
20 H 0.091 0.909
21 H 0.082 0.918
22 H 0.096 0.904
23 H 0.146 0.854
24 H 0.138 0.862
25 H 0.150 0.850
26 H 0.052 0.948
27 H 0.053 0.947
28 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.124 -0.099 -1.712 6.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.102 4.102
3 N -0.111 5.111
4 N -0.159 5.159
5 C -0.058 4.058
6 C -0.147 4.147
7 C -0.091 4.091
8 C -0.202 4.202
9 C 0.055 3.945
10 C 0.000 4.000
11 C -0.560 4.560
12 H 0.076 0.924
13 C -0.136 4.136
14 N -0.524 5.524
15 Si 0.725 3.275
16 H -0.203 1.203
17 H -0.208 1.208
18 H -0.197 1.197
19 N -0.061 5.061
20 H 0.109 0.891
21 H 0.101 0.899
22 H 0.114 0.886
23 H 0.163 0.837
24 H 0.156 0.844
25 H 0.168 0.832
26 H 0.070 0.930
27 H 0.071 0.929
28 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 6.277 1.486 -1.766 6.688
hybrid contribution -0.626 -1.580 1.032 1.988
sum 5.650 -0.094 -0.735 5.699
Atomic orbital electron populations
1.20502 0.82977 1.03923 1.05277 1.24873 0.97128 0.80764 1.07433
1.74102 0.96641 1.23820 1.16554 1.74795 1.11238 1.06279 1.23611
1.22289 0.85338 0.92720 1.05450 1.19970 0.96549 0.91131 1.07039
1.21149 0.97118 0.94901 0.95890 1.20644 0.90721 1.00488 1.08390
1.21511 1.01215 0.78936 0.92819 1.18916 0.83296 0.98181 0.99628
1.20841 0.98749 1.46109 0.90347 0.92365 1.24935 0.96273 0.94696
0.97667 1.69923 1.07472 1.44032 1.30924 0.86474 0.78705 0.78206
0.84078 1.20273 1.20850 1.19702 1.43732 1.08233 1.07240 1.46939
0.89075 0.89891 0.88565 0.83656 0.84413 0.83197 0.93024 0.92895
0.92314
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.24 9.48 36.00 0.34 -0.90 15
2 C 0.16 3.37 8.09 -154.22 -1.25 2.12 15
3 N -0.27 -5.96 12.19 32.94 0.40 -5.56 15
4 N -0.31 -6.86 12.31 31.14 0.38 -6.47 15
5 C 0.19 3.86 7.92 -156.06 -1.24 2.63 15
6 C -0.13 -2.01 10.11 -39.40 -0.40 -2.40 15
7 C -0.07 -0.95 10.07 -39.51 -0.40 -1.35 15
8 C -0.18 -3.10 9.60 -39.88 -0.38 -3.48 15
9 C 0.16 3.23 5.98 -81.73 -0.49 2.74 15
10 C 0.04 0.83 4.65 -29.03 -0.14 0.69 15
11 C -0.52 -13.02 9.09 -34.44 -0.31 -13.33 15
12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15
13 C 0.07 1.72 5.46 -17.82 -0.10 1.62 15
14 N -0.89 -23.32 13.29 55.43 0.74 -22.58 15
15 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 15
16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15
17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15
18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15
19 N -0.38 -7.99 2.95 -55.54 -0.16 -8.16 15
20 H 0.09 1.71 8.14 -51.93 -0.42 1.29 15
21 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15
22 H 0.10 1.80 5.29 -51.93 -0.27 1.53 15
23 H 0.15 1.88 8.06 -52.49 -0.42 1.45 15
24 H 0.14 1.42 8.06 -52.48 -0.42 0.99 15
25 H 0.15 2.30 8.06 -52.49 -0.42 1.88 15
26 H 0.05 1.19 4.44 -51.93 -0.23 0.96 15
27 H 0.05 1.22 8.09 -51.93 -0.42 0.80 15
28 H 0.27 6.70 8.31 -40.82 -0.34 6.36 15
LS Contribution 246.36 15.07 3.71 3.71
Total: -1.00 -28.90 246.36 -6.89 -35.79
By element:
Atomic # 1 Polarization: 2.63 SS G_CDS: -2.58 Total: 0.05 kcal
Atomic # 6 Polarization: -7.31 SS G_CDS: -4.36 Total: -11.66 kcal
Atomic # 7 Polarization: -44.13 SS G_CDS: 1.36 Total: -42.77 kcal
Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal
Total LS contribution 3.71 Total: 3.71 kcal
Total: -28.90 -6.89 -35.79 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260627320.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.481 kcal
(2) G-P(sol) polarization free energy of solvation -28.905 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.791 kcal
(6) G-S(sol) free energy of system = (1) + (5) 95.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds