Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30810 * 126.24631 * 2 1 4 4 N 1.28683 * 110.28825 * 180.02562 * 3 2 1 5 5 C 1.32308 * 109.48724 * 359.71164 * 4 3 2 6 6 C 1.40810 * 133.46424 * 179.47992 * 5 4 3 7 7 C 1.36027 * 119.22273 * 180.50282 * 6 5 4 8 8 C 1.40542 * 119.74982 * 0.27289 * 7 6 5 9 9 C 1.34955 * 120.36489 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.74320 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.46872 * 87.75823 * 10 9 8 12 12 H 1.07996 * 120.00155 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99555 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00176 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47134 * 89.99458 * 15 13 11 17 17 H 1.48499 * 109.47402 * 209.99849 * 15 13 11 18 18 H 1.48501 * 109.46846 * 330.00264 * 15 13 11 19 19 N 1.36058 * 126.25005 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.47050 * 261.65870 * 1 2 3 21 21 H 1.09001 * 109.47285 * 21.65133 * 1 2 3 22 22 H 1.08999 * 109.47308 * 141.65441 * 1 2 3 23 23 H 1.07993 * 120.39021 * 0.77252 * 6 5 4 24 24 H 1.08007 * 120.12004 * 180.25564 * 7 6 5 25 25 H 1.08002 * 119.81534 * 180.02562 * 8 7 6 26 26 H 1.08997 * 109.47025 * 207.75519 * 10 9 8 27 27 H 1.08997 * 109.46971 * 327.76268 * 10 9 8 28 28 H 0.97002 * 119.99106 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2804 1.0550 0.0000 4 7 3.5176 0.7012 -0.0005 5 6 3.5991 -0.6194 0.0054 6 6 4.6787 -1.5233 -0.0017 7 6 4.4258 -2.8599 -0.0025 8 6 3.0972 -3.3182 -0.0022 9 6 2.0726 -2.4400 -0.0016 10 6 0.6533 -2.9469 -0.0018 11 6 0.1991 -3.1691 1.4179 12 1 0.8710 -2.9642 2.2382 13 6 -1.0743 -3.6341 1.6694 14 7 -1.8927 -3.8831 0.6704 15 14 -1.6377 -3.9088 3.4291 16 1 -2.2570 -2.6639 3.9507 17 1 -2.6339 -5.0095 3.4638 18 1 -0.4699 -4.2712 4.2718 19 7 2.3115 -1.0972 -0.0005 20 1 -0.3633 -0.1491 1.0168 21 1 -0.3634 0.9552 -0.3792 22 1 -0.3634 -0.8060 -0.6375 23 1 5.6956 -1.1598 -0.0020 24 1 5.2430 -3.5661 -0.0037 25 1 2.8952 -4.3792 -0.0024 26 1 0.0053 -2.2124 -0.4799 27 1 0.6036 -3.8874 -0.5506 28 1 -2.7887 -4.2099 0.8475 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260627320.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = 80.287900 kcal Electronic energy + Delta-G solvation = -14224.876216 eV Core-core repulsion = 11855.638697 eV Total energy + Delta-G solvation = -2369.237518 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.49733 -39.32602 -36.07447 -34.77781 -32.87072 -32.16926 -30.02681 -27.78864 -25.68824 -24.29905 -24.09910 -21.52810 -18.96899 -18.69184 -17.73043 -17.48260 -16.67541 -16.41338 -15.22738 -14.92060 -14.56202 -14.33605 -13.99823 -13.51851 -13.34051 -13.13085 -12.93827 -12.84966 -12.49196 -12.32979 -11.95896 -11.89428 -11.57438 -11.37873 -10.62059 -10.40449 -8.83810 -8.24948 -6.38510 -0.16916 0.20988 1.38857 1.41132 1.43578 1.50710 1.67829 2.34600 2.49555 3.07133 3.16988 3.59754 3.66450 3.79226 4.03091 4.17553 4.46921 4.60748 4.76977 4.79831 4.95799 5.08329 5.14188 5.23301 5.24281 5.42694 5.64725 5.67191 5.98526 6.07480 6.68312 7.30133 7.49124 8.82043 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.033196 B = 0.010167 C = 0.008814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.265710 B = 2753.366576 C = 3176.012549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.142 3.858 3 N -0.290 5.290 4 N -0.344 5.344 5 C 0.180 3.820 6 C -0.125 4.125 7 C -0.046 4.046 8 C -0.161 4.161 9 C 0.117 3.883 10 C 0.045 3.955 11 C -0.528 4.528 12 H 0.046 0.954 13 C 0.027 3.973 14 N -0.914 5.914 15 Si 0.952 3.048 16 H -0.276 1.276 17 H -0.278 1.278 18 H -0.271 1.271 19 N -0.388 5.388 20 H 0.080 0.920 21 H 0.107 0.893 22 H 0.087 0.913 23 H 0.181 0.819 24 H 0.194 0.806 25 H 0.169 0.831 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.853 -1.236 -1.303 8.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.122 4.122 3 N -0.130 5.130 4 N -0.189 5.189 5 C -0.069 4.069 6 C -0.146 4.146 7 C -0.070 4.070 8 C -0.182 4.182 9 C 0.013 3.987 10 C 0.008 3.992 11 C -0.566 4.566 12 H 0.064 0.936 13 C -0.174 4.174 14 N -0.552 5.552 15 Si 0.777 3.223 16 H -0.202 1.202 17 H -0.203 1.203 18 H -0.195 1.195 19 N -0.067 5.067 20 H 0.098 0.902 21 H 0.126 0.874 22 H 0.105 0.895 23 H 0.198 0.802 24 H 0.211 0.789 25 H 0.186 0.814 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.012 0.350 -1.357 8.134 hybrid contribution -1.056 -1.290 0.876 1.883 sum 6.956 -0.940 -0.481 7.036 Atomic orbital electron populations 1.20448 0.81928 1.04911 1.04440 1.25219 0.97922 0.80954 1.08060 1.74002 0.97080 1.24558 1.17348 1.74694 1.11234 1.07502 1.25493 1.23025 0.86178 0.92799 1.04917 1.20575 0.96972 0.91180 1.05893 1.21678 0.97132 0.95155 0.93038 1.21134 0.91405 1.00946 1.04667 1.21363 1.00944 0.79257 0.97152 1.18632 0.85110 0.97368 0.98061 1.21012 0.98674 1.45537 0.91330 0.93562 1.25576 0.96444 0.94634 1.00715 1.70002 1.07782 1.44988 1.32477 0.85642 0.78251 0.78077 0.80318 1.20205 1.20332 1.19548 1.43804 1.08596 1.07367 1.46973 0.90163 0.87450 0.89461 0.80152 0.78858 0.81353 0.94117 0.94019 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.20 9.48 71.23 0.68 -1.53 15 2 C 0.14 6.04 8.09 137.71 1.11 7.15 15 3 N -0.29 -12.91 12.19 -49.69 -0.61 -13.52 15 4 N -0.34 -14.94 12.31 -55.40 -0.68 -15.63 15 5 C 0.18 7.03 7.92 134.06 1.06 8.09 15 6 C -0.13 -3.53 10.11 22.38 0.23 -3.31 15 7 C -0.05 -1.09 10.07 22.32 0.22 -0.87 15 8 C -0.16 -5.00 9.60 22.08 0.21 -4.79 15 9 C 0.12 4.65 5.98 41.10 0.25 4.89 15 10 C 0.05 2.06 4.65 29.11 0.14 2.20 15 11 C -0.53 -26.42 9.09 25.60 0.23 -26.19 15 12 H 0.05 2.38 7.74 -2.91 -0.02 2.36 15 13 C 0.03 1.37 5.46 84.65 0.46 1.83 15 14 N -0.91 -48.47 13.29 21.45 0.28 -48.19 15 15 Si 0.95 40.62 29.54 68.60 2.03 42.64 15 16 H -0.28 -11.69 7.11 99.48 0.71 -10.99 15 17 H -0.28 -11.57 7.11 99.48 0.71 -10.86 15 18 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 19 N -0.39 -16.14 2.95 -329.64 -0.97 -17.11 15 20 H 0.08 3.13 8.14 -2.39 -0.02 3.11 15 21 H 0.11 3.36 8.14 -2.39 -0.02 3.34 15 22 H 0.09 3.40 5.29 -2.39 -0.01 3.39 15 23 H 0.18 3.78 8.06 -2.91 -0.02 3.75 15 24 H 0.19 2.55 8.06 -2.91 -0.02 2.52 15 25 H 0.17 4.58 8.06 -2.91 -0.02 4.56 15 26 H 0.04 1.94 4.44 -2.39 -0.01 1.93 15 27 H 0.04 1.95 8.09 -2.39 -0.02 1.93 15 28 H 0.27 13.54 8.31 -92.71 -0.77 12.77 15 Total: -1.00 -63.01 246.36 5.82 -57.19 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.18 Total: 7.12 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.59 Total: -12.51 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -1.98 Total: -94.44 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Total: -63.01 5.82 -57.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627320.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.477 kcal (2) G-P(sol) polarization free energy of solvation -63.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds