Wall clock time and date at job start Mon Mar 30 2020 03:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99863 * 2 1 4 4 H 1.48497 * 109.46901 * 269.99741 * 3 2 1 5 5 H 1.48488 * 109.47487 * 30.00181 * 3 2 1 6 6 H 1.48503 * 109.47026 * 150.00561 * 3 2 1 7 7 C 1.37874 * 120.00305 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99767 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.38881 * 305.19641 * 10 9 7 12 12 C 1.52900 * 109.39172 * 65.00083 * 10 9 7 13 13 N 1.47167 * 108.49395 * 170.54050 * 12 10 9 14 14 C 1.46634 * 110.24668 * 288.70138 * 13 12 10 15 15 C 1.50633 * 110.49821 * 52.48500 * 14 13 12 16 16 C 1.38732 * 118.42715 * 162.66948 * 15 14 13 17 17 C 1.38006 * 120.38090 * 179.87472 * 16 15 14 18 18 C 1.38265 * 119.86861 * 359.95963 * 17 16 15 19 19 C 1.38034 * 119.82635 * 0.06505 * 18 17 16 20 20 C 1.37839 * 121.85018 * 342.61316 * 15 14 13 21 21 H 0.97002 * 120.00008 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 23 23 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 24 24 H 1.09002 * 109.63356 * 290.24557 * 12 10 9 25 25 H 1.09001 * 109.63390 * 50.63873 * 12 10 9 26 26 H 1.00903 * 110.99670 * 52.11328 * 13 12 10 27 27 H 1.09001 * 109.27428 * 172.74518 * 14 13 12 28 28 H 1.09004 * 109.27053 * 292.26181 * 14 13 12 29 29 H 1.08001 * 119.80887 * 359.84675 * 16 15 14 30 30 H 1.07998 * 120.06981 * 179.97438 * 17 16 15 31 31 H 1.07996 * 120.08525 * 180.02562 * 18 17 16 32 32 H 1.07994 * 119.82278 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 1 3.5837 -3.1750 0.8405 12 6 3.6156 -3.3186 -1.3068 13 7 4.3027 -4.6175 -1.3885 14 6 5.7344 -4.4195 -1.6355 15 6 6.3176 -3.4680 -0.6237 16 6 7.6953 -3.4378 -0.4630 17 6 8.2727 -2.5797 0.4507 18 6 7.4748 -1.7442 1.2104 19 6 6.1039 -1.7734 1.0521 20 6 5.5226 -2.6365 0.1356 21 1 -0.4850 0.8401 0.0004 22 1 3.8753 -0.6796 0.8894 23 1 3.8746 -0.6807 -0.8905 24 1 2.5367 -3.4736 -1.3193 25 1 3.9055 -2.6938 -2.1515 26 1 4.1518 -5.1596 -0.5509 27 1 6.2477 -5.3785 -1.5650 28 1 5.8736 -4.0096 -2.6359 29 1 8.3194 -4.0898 -1.0560 30 1 9.3457 -2.5606 0.5720 31 1 7.9230 -1.0710 1.9261 32 1 5.4807 -1.1211 1.6458 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260695262.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:07 Heat of formation + Delta-G solvation = -5.610634 kcal Electronic energy + Delta-G solvation = -14367.701727 eV Core-core repulsion = 12098.279712 eV Total energy + Delta-G solvation = -2269.422015 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.16166 -37.64217 -35.72341 -34.02887 -31.64518 -31.00850 -28.79531 -25.49692 -24.58349 -23.63231 -21.87991 -20.79755 -19.08348 -17.32181 -16.99970 -16.46171 -16.20474 -15.88870 -15.05183 -14.77488 -14.64396 -14.29926 -14.19056 -13.60086 -13.26802 -12.92468 -12.78536 -12.54630 -12.35391 -12.16426 -11.96323 -11.83672 -11.44878 -11.15783 -10.78657 -9.65243 -9.50407 -9.33358 -8.30220 -6.33076 0.45416 0.49740 1.31988 1.33056 1.44501 2.33042 2.85414 3.04237 3.38925 3.83777 3.93786 3.99215 4.14055 4.24556 4.33956 4.49851 4.62783 4.67295 4.72944 4.85036 4.90202 5.13698 5.16147 5.24593 5.27122 5.42335 5.52527 5.60480 5.68760 5.79130 5.99175 6.16000 6.26582 6.44919 6.73399 7.30809 8.86018 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032472 B = 0.009579 C = 0.007795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.080283 B = 2922.335943 C = 3591.094994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.522 4.522 8 H 0.041 0.959 9 C 0.007 3.993 10 C -0.067 4.067 11 H 0.062 0.938 12 C 0.080 3.920 13 N -0.680 5.680 14 C 0.097 3.903 15 C -0.132 4.132 16 C -0.115 4.115 17 C -0.126 4.126 18 C -0.127 4.127 19 C -0.140 4.140 20 C -0.086 4.086 21 H 0.266 0.734 22 H 0.019 0.981 23 H 0.009 0.991 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.344 0.656 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.139 0.861 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.784 -6.115 -0.452 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.560 4.560 8 H 0.059 0.941 9 C -0.030 4.030 10 C -0.087 4.087 11 H 0.080 0.920 12 C -0.050 4.050 13 N -0.307 5.307 14 C -0.033 4.033 15 C -0.134 4.134 16 C -0.133 4.133 17 C -0.144 4.144 18 C -0.145 4.145 19 C -0.158 4.158 20 C -0.087 4.087 21 H 0.075 0.925 22 H 0.037 0.963 23 H 0.028 0.972 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.162 0.838 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.169 0.831 30 H 0.169 0.831 31 H 0.157 0.843 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.458 -6.143 -1.149 18.543 hybrid contribution -0.284 1.436 1.092 1.826 sum 17.174 -4.707 -0.057 17.807 Atomic orbital electron populations 1.70050 1.08057 1.28004 1.52726 1.25894 0.95507 1.03060 0.94376 0.85783 0.79494 0.79084 0.79082 1.19439 1.20821 1.17514 1.21400 0.91430 0.93269 1.49891 0.94101 1.19498 0.94215 0.93244 0.96087 1.20524 0.90849 0.98177 0.99143 0.91994 1.21815 0.98538 0.89277 0.95352 1.61068 1.10069 1.16466 1.43066 1.21082 0.87386 0.98183 0.96625 1.20754 0.94832 0.98941 0.98838 1.21384 0.93404 0.99681 0.98866 1.21424 1.00951 0.95896 0.96145 1.21369 0.92824 0.99936 1.00400 1.21337 0.96153 0.99230 0.99061 1.19864 0.95168 0.96703 0.96937 0.92534 0.96252 0.97245 0.91722 0.91990 0.83849 0.87176 0.89648 0.83109 0.83097 0.84348 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 2 C 0.01 0.51 5.47 84.65 0.46 0.97 16 3 Si 0.94 45.05 27.47 68.60 1.88 46.93 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 7 C -0.52 -29.98 9.07 25.60 0.23 -29.75 16 8 H 0.04 2.56 7.33 -2.91 -0.02 2.53 16 9 C 0.01 0.35 3.19 29.85 0.10 0.45 16 10 C -0.07 -2.71 2.29 -11.57 -0.03 -2.74 16 11 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 12 C 0.08 3.05 5.54 86.22 0.48 3.53 16 13 N -0.68 -20.64 6.96 -518.22 -3.61 -24.25 16 14 C 0.10 2.43 6.34 85.59 0.54 2.98 16 15 C -0.13 -3.75 5.79 -19.86 -0.12 -3.87 16 16 C -0.12 -2.61 9.65 22.33 0.22 -2.40 16 17 C -0.13 -2.78 10.05 22.22 0.22 -2.56 16 18 C -0.13 -3.34 10.05 22.23 0.22 -3.12 16 19 C -0.14 -4.67 9.07 22.32 0.20 -4.47 16 20 C -0.09 -3.01 5.45 -19.85 -0.11 -3.12 16 21 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 22 H 0.02 0.92 5.33 -2.39 -0.01 0.91 16 23 H 0.01 0.45 7.55 -2.39 -0.02 0.43 16 24 H 0.06 2.78 7.27 -2.39 -0.02 2.76 16 25 H 0.06 2.44 8.01 -2.39 -0.02 2.42 16 26 H 0.34 9.80 8.74 -89.69 -0.78 9.02 16 27 H 0.11 2.10 8.13 -2.39 -0.02 2.08 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 30 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.11 3.89 6.40 -2.91 -0.02 3.87 16 Total: -1.00 -65.87 258.64 1.28 -64.59 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.27 Total: 16.14 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 2.43 Total: -44.09 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -3.31 Total: -83.57 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.93 kcal Total: -65.87 1.28 -64.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260695262.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.982 kcal (2) G-P(sol) polarization free energy of solvation -65.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds