Wall clock time and date at job start Mon Mar 30 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46815 * 2 1 4 4 C 1.50702 * 109.46993 * 119.99675 * 2 1 3 5 5 H 1.08003 * 119.99718 * 120.00156 * 4 2 1 6 6 C 1.37884 * 119.99982 * 300.00370 * 4 2 1 7 7 N 1.31508 * 119.99570 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00002 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47016 * 90.00198 * 8 6 4 10 10 H 1.48499 * 109.47321 * 210.00303 * 8 6 4 11 11 H 1.48497 * 109.47527 * 330.00206 * 8 6 4 12 12 C 1.50694 * 109.47415 * 240.00071 * 2 1 3 13 13 N 1.30289 * 124.93811 * 144.94881 * 12 2 1 14 14 C 1.35252 * 109.63123 * 180.02562 * 13 12 2 15 15 C 1.39971 * 134.81758 * 180.02562 * 14 13 12 16 16 C 1.36605 * 118.82932 * 179.97438 * 15 14 13 17 17 N 1.32253 * 121.48594 * 359.97438 * 16 15 14 18 18 C 1.31833 * 122.31429 * 0.02562 * 17 16 15 19 19 C 1.38565 * 120.20935 * 359.95463 * 18 17 16 20 20 N 1.35935 * 124.92939 * 324.99764 * 12 2 1 21 21 H 0.96995 * 126.34908 * 359.96106 * 20 12 2 22 22 H 1.09006 * 109.47013 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.46815 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47482 * 300.00223 * 1 2 3 25 25 H 0.97004 * 119.99876 * 179.97438 * 7 6 4 26 26 H 1.08002 * 120.58629 * 359.94908 * 15 14 13 27 27 H 1.08002 * 119.25725 * 179.72124 * 16 15 14 28 28 H 1.08004 * 119.89431 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9955 3.9070 11 1 0.8490 2.1773 1.4923 12 6 2.0324 -0.7103 -1.2304 13 7 3.1055 -0.3851 -1.8939 14 6 3.2646 -1.2260 -2.9412 15 6 4.2074 -1.3563 -3.9675 16 6 4.0488 -2.3562 -4.8847 17 7 3.0296 -3.1966 -4.8210 18 6 2.1120 -3.1214 -3.8774 19 6 2.1921 -2.1387 -2.9037 20 7 1.4312 -1.7830 -1.8098 21 1 0.6183 -2.2184 -1.5091 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.9031 -0.5279 4.4376 26 1 5.0453 -0.6781 -4.0333 27 1 4.7697 -2.4602 -5.6821 28 1 1.2956 -3.8282 -3.8629 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260716150.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:13 Heat of formation + Delta-G solvation = 76.849742 kcal Electronic energy + Delta-G solvation = -13889.345217 eV Core-core repulsion = 11519.958609 eV Total energy + Delta-G solvation = -2369.386608 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.94830 -38.29166 -34.61009 -32.95316 -31.70197 -30.31285 -29.21582 -25.43835 -23.90834 -22.71627 -21.74506 -19.88617 -17.73052 -17.30820 -16.76540 -15.58908 -15.20907 -14.76783 -14.23413 -14.00492 -13.44523 -13.08643 -12.73122 -12.41803 -11.96524 -11.52027 -11.30358 -10.77530 -10.56098 -10.41405 -9.84252 -9.76549 -9.49079 -9.33226 -8.79041 -8.24502 -8.14370 -6.28845 -4.33302 1.12445 1.67104 3.10957 3.22668 3.24070 3.26794 3.33393 4.17840 4.20118 4.48313 4.66992 4.92158 5.02455 5.24841 5.46708 5.60790 5.74595 5.95539 6.01528 6.10393 6.14571 6.42392 6.59422 6.67806 6.87198 7.03241 7.34417 7.69003 8.17995 8.22169 8.34900 8.71212 9.27351 10.83364 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.058794 B = 0.007434 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.128155 B = 3765.455331 C = 3818.524158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.520 4.520 5 H 0.077 0.923 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.887 3.113 9 H -0.276 1.276 10 H -0.292 1.292 11 H -0.262 1.262 12 C 0.370 3.630 13 N -0.512 5.512 14 C 0.092 3.908 15 C -0.125 4.125 16 C 0.062 3.938 17 N -0.484 5.484 18 C 0.131 3.869 19 C -0.027 4.027 20 N -0.585 5.585 21 H 0.425 0.575 22 H 0.038 0.962 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.269 0.731 26 H 0.135 0.865 27 H 0.155 0.845 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.848 -0.833 -11.321 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.088 0.912 4 C -0.559 4.559 5 H 0.095 0.905 6 C -0.125 4.125 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.219 1.219 11 H -0.187 1.187 12 C 0.103 3.897 13 N -0.232 5.232 14 C -0.036 4.036 15 C -0.146 4.146 16 C -0.088 4.088 17 N -0.194 5.194 18 C -0.037 4.037 19 C -0.140 4.140 20 N -0.195 5.195 21 H 0.264 0.736 22 H 0.057 0.943 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.153 0.847 27 H 0.172 0.828 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.221 -0.794 -11.646 11.882 hybrid contribution -1.350 0.490 0.968 1.732 sum -3.571 -0.303 -10.677 11.263 Atomic orbital electron populations 1.22255 0.97593 1.01232 1.00250 1.18165 0.92065 0.97058 0.87341 0.91228 1.20635 1.33566 1.14232 0.87468 0.90505 1.24912 0.95516 0.96621 0.95432 1.69858 1.44439 1.39986 0.98120 0.86855 0.80332 0.83503 0.77713 1.20262 1.21893 1.18717 1.24468 0.87233 0.84406 0.93571 1.70514 1.17603 1.28006 1.07109 1.19437 0.94895 0.93521 0.95724 1.20942 0.99248 1.00483 0.93967 1.21955 0.96160 0.92041 0.98656 1.67663 1.03053 1.26143 1.22512 1.21631 0.97939 0.95036 0.89060 1.20058 0.97276 1.02407 0.94255 1.43143 1.25033 1.28332 1.23041 0.73565 0.94252 0.92743 0.92472 0.92103 0.84684 0.82793 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 8.40 37.16 0.31 -2.60 15 2 C 0.07 1.65 2.36 -92.92 -0.22 1.43 15 3 H 0.07 1.59 7.20 -51.93 -0.37 1.22 15 4 C -0.52 -13.74 9.13 -34.44 -0.31 -14.06 15 5 H 0.08 2.28 7.98 -52.48 -0.42 1.86 15 6 C 0.08 2.13 5.45 -17.82 -0.10 2.03 15 7 N -0.89 -25.71 13.96 55.43 0.77 -24.94 15 8 Si 0.89 20.10 24.37 -169.99 -4.14 15.96 15 9 H -0.28 -5.96 6.87 56.52 0.39 -5.58 15 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.26 -5.66 6.53 56.52 0.37 -5.29 15 12 C 0.37 7.75 6.75 -154.77 -1.04 6.71 15 13 N -0.51 -11.25 11.26 -8.19 -0.09 -11.34 15 14 C 0.09 1.78 7.30 -84.71 -0.62 1.16 15 15 C -0.12 -1.99 10.12 -39.52 -0.40 -2.39 15 16 C 0.06 0.89 11.09 -17.96 -0.20 0.69 15 17 N -0.48 -7.45 10.34 -13.48 -0.14 -7.59 15 18 C 0.13 1.97 11.24 -17.43 -0.20 1.78 15 19 C -0.03 -0.46 7.36 -84.01 -0.62 -1.08 15 20 N -0.59 -10.24 5.96 -7.99 -0.05 -10.29 15 21 H 0.42 6.10 8.09 -40.82 -0.33 5.77 15 22 H 0.04 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.05 0.92 7.36 -51.93 -0.38 0.54 15 24 H 0.06 1.13 3.27 -51.93 -0.17 0.96 15 25 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 26 H 0.14 1.87 8.06 -52.49 -0.42 1.44 15 27 H 0.15 1.64 8.06 -52.49 -0.42 1.21 15 28 H 0.15 1.76 8.06 -52.48 -0.42 1.33 15 LS Contribution 240.12 15.07 3.62 3.62 Total: -1.00 -30.66 240.12 -5.97 -36.64 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.55 Total: 4.29 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -3.40 Total: -6.35 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.49 Total: -54.15 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.14 Total: 15.96 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.66 -5.97 -36.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260716150.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.485 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds