Wall clock time and date at job start Mon Mar 30 2020 03:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46815 * 2 1 4 4 C 1.50702 * 109.46993 * 119.99675 * 2 1 3 5 5 H 1.08003 * 119.99718 * 120.00156 * 4 2 1 6 6 C 1.37884 * 119.99982 * 300.00370 * 4 2 1 7 7 N 1.31508 * 119.99570 * 179.97438 * 6 4 2 8 8 Si 1.86793 * 120.00002 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47016 * 90.00198 * 8 6 4 10 10 H 1.48499 * 109.47321 * 210.00303 * 8 6 4 11 11 H 1.48497 * 109.47527 * 330.00206 * 8 6 4 12 12 C 1.50694 * 109.47415 * 240.00071 * 2 1 3 13 13 N 1.30289 * 124.93811 * 144.94881 * 12 2 1 14 14 C 1.35252 * 109.63123 * 180.02562 * 13 12 2 15 15 C 1.39971 * 134.81758 * 180.02562 * 14 13 12 16 16 C 1.36605 * 118.82932 * 179.97438 * 15 14 13 17 17 N 1.32253 * 121.48594 * 359.97438 * 16 15 14 18 18 C 1.31833 * 122.31429 * 0.02562 * 17 16 15 19 19 C 1.38565 * 120.20935 * 359.95463 * 18 17 16 20 20 N 1.35935 * 124.92939 * 324.99764 * 12 2 1 21 21 H 0.96995 * 126.34908 * 359.96106 * 20 12 2 22 22 H 1.09006 * 109.47013 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.46815 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47482 * 300.00223 * 1 2 3 25 25 H 0.97004 * 119.99876 * 179.97438 * 7 6 4 26 26 H 1.08002 * 120.58629 * 359.94908 * 15 14 13 27 27 H 1.08002 * 119.25725 * 179.72124 * 16 15 14 28 28 H 1.08004 * 119.89431 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6258 1.2799 2.6541 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9955 3.9070 11 1 0.8490 2.1773 1.4923 12 6 2.0324 -0.7103 -1.2304 13 7 3.1055 -0.3851 -1.8939 14 6 3.2646 -1.2260 -2.9412 15 6 4.2074 -1.3563 -3.9675 16 6 4.0488 -2.3562 -4.8847 17 7 3.0296 -3.1966 -4.8210 18 6 2.1120 -3.1214 -3.8774 19 6 2.1921 -2.1387 -2.9037 20 7 1.4312 -1.7830 -1.8098 21 1 0.6183 -2.2184 -1.5091 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.9031 -0.5279 4.4376 26 1 5.0453 -0.6781 -4.0333 27 1 4.7697 -2.4602 -5.6821 28 1 1.2956 -3.8282 -3.8629 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260716150.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:12 Heat of formation + Delta-G solvation = 54.649104 kcal Electronic energy + Delta-G solvation = -13890.307909 eV Core-core repulsion = 11519.958609 eV Total energy + Delta-G solvation = -2370.349300 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.33719 -39.57421 -36.36604 -34.35848 -33.61234 -31.61645 -30.57163 -27.25125 -25.45925 -24.01324 -23.16377 -21.46891 -19.11586 -19.02461 -18.34805 -17.08325 -16.67075 -16.28715 -15.56820 -15.36271 -14.91900 -14.87626 -14.25608 -13.89045 -13.31235 -13.06642 -12.97246 -12.57194 -12.08977 -11.95918 -11.47315 -11.44161 -11.25472 -10.80568 -10.62240 -9.66330 -9.43682 -8.36082 -6.45868 -0.17382 0.39065 1.32533 1.41544 1.50898 1.79336 1.92681 2.29463 2.91419 2.96761 3.14055 3.53948 3.64507 4.02793 4.09214 4.29890 4.44889 4.52407 4.58443 4.68979 4.84380 4.98518 5.12418 5.33962 5.38834 5.44519 5.70865 6.10191 6.36700 6.58390 6.85597 6.99512 7.19176 8.80268 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.058794 B = 0.007434 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.128155 B = 3765.455331 C = 3818.524158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.077 3.923 3 H 0.059 0.941 4 C -0.521 4.521 5 H 0.026 0.974 6 C 0.023 3.977 7 N -0.941 5.941 8 Si 0.952 3.048 9 H -0.252 1.252 10 H -0.299 1.299 11 H -0.243 1.243 12 C 0.348 3.652 13 N -0.547 5.547 14 C 0.052 3.948 15 C -0.134 4.134 16 C 0.073 3.927 17 N -0.488 5.488 18 C 0.140 3.860 19 C -0.034 4.034 20 N -0.571 5.571 21 H 0.438 0.562 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.271 0.729 26 H 0.151 0.849 27 H 0.195 0.805 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -0.696 -13.440 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.056 3.944 3 H 0.077 0.923 4 C -0.560 4.560 5 H 0.044 0.956 6 C -0.176 4.176 7 N -0.580 5.580 8 Si 0.777 3.223 9 H -0.177 1.177 10 H -0.227 1.227 11 H -0.167 1.167 12 C 0.079 3.921 13 N -0.268 5.268 14 C -0.075 4.075 15 C -0.156 4.156 16 C -0.077 4.077 17 N -0.198 5.198 18 C -0.029 4.029 19 C -0.147 4.147 20 N -0.183 5.183 21 H 0.280 0.720 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.168 0.832 27 H 0.211 0.789 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.642 -0.678 -13.802 14.290 hybrid contribution -0.763 0.316 1.493 1.706 sum -4.405 -0.362 -12.309 13.078 Atomic orbital electron populations 1.22151 0.94434 1.02720 1.01454 1.17978 0.94502 0.95892 0.85981 0.92267 1.20757 1.32555 1.12871 0.89822 0.95608 1.25821 0.97008 1.00018 0.94754 1.70018 1.46718 1.42354 0.98875 0.85804 0.79355 0.79311 0.77792 1.17692 1.22667 1.16713 1.24097 0.88047 0.85984 0.93948 1.70383 1.18280 1.29679 1.08459 1.19940 0.96925 0.94255 0.96334 1.21264 0.99271 1.01489 0.93529 1.22571 0.96078 0.90449 0.98579 1.67809 1.03341 1.26241 1.22375 1.22218 0.98510 0.94458 0.87676 1.20339 0.96842 1.02840 0.94678 1.42959 1.25228 1.27365 1.22707 0.72031 0.91059 0.91289 0.93008 0.91998 0.83174 0.78871 0.79530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 8.40 71.98 0.60 -4.66 15 2 C 0.08 3.40 2.36 -12.29 -0.03 3.37 15 3 H 0.06 2.71 7.20 -2.39 -0.02 2.69 15 4 C -0.52 -28.42 9.13 25.60 0.23 -28.19 15 5 H 0.03 1.62 7.98 -2.91 -0.02 1.59 15 6 C 0.02 1.25 5.45 84.66 0.46 1.72 15 7 N -0.94 -56.42 13.96 21.45 0.30 -56.12 15 8 Si 0.95 41.07 24.37 68.60 1.67 42.74 15 9 H -0.25 -9.85 6.87 99.48 0.68 -9.17 15 10 H -0.30 -13.16 7.11 99.48 0.71 -12.45 15 11 H -0.24 -9.68 6.53 99.48 0.65 -9.03 15 12 C 0.35 14.60 6.75 137.90 0.93 15.53 15 13 N -0.55 -24.34 11.26 -179.84 -2.03 -26.37 15 14 C 0.05 1.99 7.30 39.68 0.29 2.28 15 15 C -0.13 -4.08 10.12 22.31 0.23 -3.85 15 16 C 0.07 1.85 11.09 84.25 0.93 2.78 15 17 N -0.49 -13.44 10.34 -196.56 -2.03 -15.47 15 18 C 0.14 3.79 11.24 84.77 0.95 4.75 15 19 C -0.03 -1.14 7.36 38.91 0.29 -0.85 15 20 N -0.57 -19.47 5.96 -179.20 -1.07 -20.54 15 21 H 0.44 11.92 8.09 -92.71 -0.75 11.17 15 22 H 0.07 2.06 8.14 -2.38 -0.02 2.04 15 23 H 0.07 2.18 7.36 -2.39 -0.02 2.16 15 24 H 0.05 1.88 3.27 -2.39 -0.01 1.87 15 25 H 0.27 15.11 8.31 -92.71 -0.77 14.34 15 26 H 0.15 3.95 8.06 -2.91 -0.02 3.92 15 27 H 0.19 3.28 8.06 -2.91 -0.02 3.26 15 28 H 0.19 3.61 8.06 -2.91 -0.02 3.58 15 Total: -1.00 -68.99 240.12 2.10 -66.89 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.36 Total: 15.98 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 4.89 Total: -7.12 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -4.83 Total: -118.50 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.67 Total: 42.74 kcal Total: -68.99 2.10 -66.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260716150.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.541 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds