Wall clock time and date at job start Mon Mar 30 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99750 * 2 1 4 4 H 1.48497 * 109.46923 * 95.31535 * 3 2 1 5 5 H 1.48497 * 109.47048 * 215.31242 * 3 2 1 6 6 H 1.48501 * 109.47067 * 335.31786 * 3 2 1 7 7 C 1.37876 * 119.99921 * 180.28139 * 2 1 3 8 8 H 1.08000 * 119.99981 * 355.20287 * 7 2 1 9 9 C 1.50701 * 119.99587 * 175.21106 * 7 2 1 10 10 H 1.08997 * 109.87317 * 5.09109 * 9 7 2 11 11 C 1.50988 * 109.87999 * 126.09941 * 9 7 2 12 12 C 1.34045 * 128.45243 * 286.62830 * 11 9 7 13 13 N 1.36615 * 108.01177 * 179.89484 * 12 11 9 14 14 H 0.96994 * 125.61259 * 180.02562 * 13 12 11 15 15 C 1.36573 * 108.78727 * 0.02562 * 13 12 11 16 16 C 1.34295 * 108.13133 * 0.07066 * 15 13 12 17 17 C 1.50709 * 127.99066 * 179.71502 * 16 15 13 18 18 C 1.53336 * 108.96856 * 162.14354 * 17 16 15 19 19 C 1.53260 * 109.55601 * 47.46036 * 18 17 16 20 20 C 1.52803 * 117.84246 * 78.86985 * 19 18 17 21 21 C 1.52767 * 117.97433 * 147.91885 * 19 18 17 22 22 H 0.97003 * 120.00080 * 359.72162 * 1 2 3 23 23 H 1.07998 * 125.99952 * 359.86866 * 12 11 9 24 24 H 1.08002 * 125.93896 * 180.02562 * 15 13 12 25 25 H 1.09003 * 109.55253 * 281.98421 * 17 16 15 26 26 H 1.08999 * 109.55801 * 42.19164 * 17 16 15 27 27 H 1.08990 * 109.46683 * 167.46564 * 18 17 16 28 28 H 1.09007 * 109.45577 * 287.44336 * 18 17 16 29 29 H 1.09000 * 117.50562 * 215.42507 * 20 19 18 30 30 H 1.08996 * 117.50679 * 0.48545 * 20 19 18 31 31 H 1.09000 * 117.49948 * 359.73551 * 21 19 18 32 32 H 1.09001 * 117.50635 * 144.75235 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6089 1.9816 1.3940 5 1 3.4860 1.4753 -0.8093 6 1 1.3948 2.6825 -0.5847 7 6 2.0045 -1.1940 -0.0059 8 1 1.4673 -2.1281 0.0678 9 6 3.5076 -1.1957 -0.1148 10 1 3.8821 -0.1724 -0.0886 11 6 4.1039 -1.9900 1.0223 12 6 4.1990 -1.6513 2.3158 13 7 4.8089 -2.6790 2.9778 14 1 5.0051 -2.7016 3.9274 15 6 5.0970 -3.6694 2.0826 16 6 4.6763 -3.2725 0.8706 17 6 4.7765 -4.0172 -0.4358 18 6 3.7932 -3.4004 -1.4378 19 6 3.9361 -1.8745 -1.4237 20 6 5.1092 -1.2605 -2.1864 21 6 3.6847 -1.1192 -2.7276 22 1 -0.4850 0.8401 0.0041 23 1 3.8544 -0.7279 2.7572 24 1 5.5800 -4.6083 2.3098 25 1 5.7917 -3.9371 -0.8245 26 1 4.5281 -5.0667 -0.2776 27 1 4.0102 -3.7757 -2.4377 28 1 2.7745 -3.6721 -1.1610 29 1 5.5766 -0.3724 -1.7611 30 1 5.7812 -1.9411 -2.7093 31 1 3.4196 -1.7067 -3.6065 32 1 3.2145 -0.1382 -2.6584 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260910879.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:30 Heat of formation + Delta-G solvation = 63.476976 kcal Electronic energy + Delta-G solvation = -14843.972986 eV Core-core repulsion = 12577.546835 eV Total energy + Delta-G solvation = -2266.426151 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52567 -37.55970 -32.72777 -32.63432 -30.46532 -28.05071 -26.79182 -23.51464 -22.54189 -21.32637 -19.42091 -18.99197 -17.15700 -16.99614 -16.40875 -14.60416 -14.08824 -13.89414 -13.55909 -12.90816 -12.75110 -12.50046 -12.32974 -11.81591 -11.50877 -11.07261 -10.98413 -10.76479 -10.61804 -10.36815 -10.11450 -9.57131 -9.23064 -8.97310 -8.49053 -8.45572 -7.52237 -7.16706 -5.98363 -3.93679 3.04218 3.31005 3.40330 3.41215 3.91904 4.05590 4.47562 4.78984 5.31651 5.51060 5.71319 5.72953 5.81783 5.98094 6.02972 6.04090 6.26139 6.38006 6.42284 6.56544 6.66379 6.73233 6.77704 6.83236 6.99808 7.06329 7.18087 7.39820 7.47036 7.83706 7.91594 8.06846 8.36658 8.67572 9.10298 9.65173 11.15527 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.025326 B = 0.014327 C = 0.011158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.330068 B = 1953.853859 C = 2508.699910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.869 3.131 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.291 1.291 7 C -0.479 4.479 8 H 0.073 0.927 9 C 0.104 3.896 10 H 0.043 0.957 11 C -0.108 4.108 12 C -0.028 4.028 13 N -0.576 5.576 14 H 0.404 0.596 15 C -0.033 4.033 16 C -0.165 4.165 17 C -0.036 4.036 18 C -0.071 4.071 19 C -0.080 4.080 20 C -0.198 4.198 21 C -0.170 4.170 22 H 0.261 0.739 23 H 0.153 0.847 24 H 0.149 0.851 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.443 -4.611 1.385 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.130 4.130 3 Si 0.697 3.303 4 H -0.204 1.204 5 H -0.188 1.188 6 H -0.217 1.217 7 C -0.517 4.517 8 H 0.091 0.909 9 C 0.085 3.915 10 H 0.061 0.939 11 C -0.115 4.115 12 C -0.156 4.156 13 N -0.172 5.172 14 H 0.238 0.762 15 C -0.162 4.162 16 C -0.173 4.173 17 C -0.074 4.074 18 C -0.108 4.108 19 C -0.081 4.081 20 C -0.235 4.235 21 C -0.207 4.207 22 H 0.071 0.929 23 H 0.171 0.829 24 H 0.167 0.833 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.288 -4.481 1.523 11.325 hybrid contribution 0.388 0.961 0.526 1.162 sum 10.677 -3.520 2.049 11.427 Atomic orbital electron populations 1.69899 1.06150 1.26606 1.51597 1.25043 0.94616 0.98452 0.94925 0.87007 0.80270 0.84300 0.78730 1.20390 1.18811 1.21734 1.20808 0.88289 0.94325 1.48323 0.90870 1.17538 0.95415 0.92731 0.85823 0.93869 1.19965 1.00898 0.95863 0.94755 1.21228 1.06769 0.94560 0.93043 1.41860 1.50350 1.15686 1.09315 0.76183 1.21160 1.10192 0.95074 0.89783 1.19390 1.06665 0.97369 0.93892 1.19823 0.98578 0.96909 0.92093 1.20986 0.99891 0.93058 0.96894 1.21654 0.98268 0.93763 0.94387 1.22979 0.91451 1.02912 1.06191 1.22756 0.97771 1.02397 0.97778 0.92859 0.82933 0.83311 0.92624 0.92652 0.93471 0.90982 0.90178 0.90360 0.90163 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.50 27.25 -169.99 -4.63 16.86 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.26 -6.26 6.39 56.52 0.36 -5.90 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.48 -13.39 8.61 -34.44 -0.30 -13.68 16 8 H 0.07 2.27 7.94 -52.49 -0.42 1.86 16 9 C 0.10 2.51 2.19 -92.50 -0.20 2.30 16 10 H 0.04 1.07 4.45 -51.93 -0.23 0.84 16 11 C -0.11 -2.40 5.20 -104.81 -0.54 -2.94 16 12 C -0.03 -0.57 11.90 -16.90 -0.20 -0.77 16 13 N -0.58 -9.32 6.09 -13.04 -0.08 -9.39 16 14 H 0.40 4.88 8.96 -40.82 -0.37 4.51 16 15 C -0.03 -0.54 11.89 -16.83 -0.20 -0.74 16 16 C -0.17 -3.22 5.89 -104.86 -0.62 -3.84 16 17 C -0.04 -0.63 6.27 -27.70 -0.17 -0.80 16 18 C -0.07 -1.36 5.55 -26.42 -0.15 -1.51 16 19 C -0.08 -1.71 1.26 -154.31 -0.19 -1.90 16 20 C -0.20 -3.74 9.93 -26.81 -0.27 -4.00 16 21 C -0.17 -3.46 9.89 -26.83 -0.27 -3.73 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 23 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 24 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 28 H 0.07 1.53 7.86 -51.92 -0.41 1.12 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.09 1.93 8.14 -51.93 -0.42 1.50 16 LS Contribution 262.52 15.07 3.96 3.96 Total: -1.00 -31.19 262.52 -7.59 -38.78 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.40 Total: 6.33 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -3.21 Total: -29.71 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.69 Total: -36.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.63 Total: 16.86 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.19 -7.59 -38.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260910879.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.253 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds