Wall clock time and date at job start Mon Mar 30 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99750 * 2 1 4 4 H 1.48497 * 109.46923 * 95.31535 * 3 2 1 5 5 H 1.48497 * 109.47048 * 215.31242 * 3 2 1 6 6 H 1.48501 * 109.47067 * 335.31786 * 3 2 1 7 7 C 1.37876 * 119.99921 * 180.28139 * 2 1 3 8 8 H 1.08000 * 119.99981 * 355.20287 * 7 2 1 9 9 C 1.50701 * 119.99587 * 175.21106 * 7 2 1 10 10 H 1.08997 * 109.87317 * 5.09109 * 9 7 2 11 11 C 1.50988 * 109.87999 * 126.09941 * 9 7 2 12 12 C 1.34045 * 128.45243 * 286.62830 * 11 9 7 13 13 N 1.36615 * 108.01177 * 179.89484 * 12 11 9 14 14 H 0.96994 * 125.61259 * 180.02562 * 13 12 11 15 15 C 1.36573 * 108.78727 * 0.02562 * 13 12 11 16 16 C 1.34295 * 108.13133 * 0.07066 * 15 13 12 17 17 C 1.50709 * 127.99066 * 179.71502 * 16 15 13 18 18 C 1.53336 * 108.96856 * 162.14354 * 17 16 15 19 19 C 1.53260 * 109.55601 * 47.46036 * 18 17 16 20 20 C 1.52803 * 117.84246 * 78.86985 * 19 18 17 21 21 C 1.52767 * 117.97433 * 147.91885 * 19 18 17 22 22 H 0.97003 * 120.00080 * 359.72162 * 1 2 3 23 23 H 1.07998 * 125.99952 * 359.86866 * 12 11 9 24 24 H 1.08002 * 125.93896 * 180.02562 * 15 13 12 25 25 H 1.09003 * 109.55253 * 281.98421 * 17 16 15 26 26 H 1.08999 * 109.55801 * 42.19164 * 17 16 15 27 27 H 1.08990 * 109.46683 * 167.46564 * 18 17 16 28 28 H 1.09007 * 109.45577 * 287.44336 * 18 17 16 29 29 H 1.09000 * 117.50562 * 215.42507 * 20 19 18 30 30 H 1.08996 * 117.50679 * 0.48545 * 20 19 18 31 31 H 1.09000 * 117.49948 * 359.73551 * 21 19 18 32 32 H 1.09001 * 117.50635 * 144.75235 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6089 1.9816 1.3940 5 1 3.4860 1.4753 -0.8093 6 1 1.3948 2.6825 -0.5847 7 6 2.0045 -1.1940 -0.0059 8 1 1.4673 -2.1281 0.0678 9 6 3.5076 -1.1957 -0.1148 10 1 3.8821 -0.1724 -0.0886 11 6 4.1039 -1.9900 1.0223 12 6 4.1990 -1.6513 2.3158 13 7 4.8089 -2.6790 2.9778 14 1 5.0051 -2.7016 3.9274 15 6 5.0970 -3.6694 2.0826 16 6 4.6763 -3.2725 0.8706 17 6 4.7765 -4.0172 -0.4358 18 6 3.7932 -3.4004 -1.4378 19 6 3.9361 -1.8745 -1.4237 20 6 5.1092 -1.2605 -2.1864 21 6 3.6847 -1.1192 -2.7276 22 1 -0.4850 0.8401 0.0041 23 1 3.8544 -0.7279 2.7572 24 1 5.5800 -4.6083 2.3098 25 1 5.7917 -3.9371 -0.8245 26 1 4.5281 -5.0667 -0.2776 27 1 4.0102 -3.7757 -2.4377 28 1 2.7745 -3.6721 -1.1610 29 1 5.5766 -0.3724 -1.7611 30 1 5.7812 -1.9411 -2.7093 31 1 3.4196 -1.7067 -3.6065 32 1 3.2145 -0.1382 -2.6584 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260910879.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:30 Heat of formation + Delta-G solvation = 44.641644 kcal Electronic energy + Delta-G solvation = -14844.789748 eV Core-core repulsion = 12577.546835 eV Total energy + Delta-G solvation = -2267.242913 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.96703 -39.13178 -34.81194 -34.06912 -32.24696 -29.53473 -28.49098 -25.27170 -24.15360 -22.90000 -20.89568 -20.53611 -19.09640 -18.50935 -18.10549 -16.37451 -15.79825 -15.49837 -15.10210 -14.64976 -14.25158 -14.11797 -13.89334 -13.56350 -13.02081 -12.88382 -12.51202 -12.49170 -12.21257 -11.93002 -11.88573 -11.68289 -10.99940 -10.66342 -10.55371 -10.11140 -8.96283 -8.68369 -8.21055 -6.19111 1.32082 1.34102 1.44032 1.64902 2.35342 2.37796 2.77344 3.10347 3.28981 3.97591 4.18612 4.29556 4.46047 4.47810 4.57078 4.67910 4.80475 4.89223 4.97446 5.09857 5.13818 5.19775 5.24065 5.28497 5.44051 5.50637 5.57609 5.76664 5.84774 5.88622 6.35574 6.50108 6.53389 6.86088 7.12361 7.42781 8.96961 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.025326 B = 0.014327 C = 0.011158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.330068 B = 1953.853859 C = 2508.699910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.012 3.988 3 Si 0.932 3.068 4 H -0.266 1.266 5 H -0.249 1.249 6 H -0.291 1.291 7 C -0.470 4.470 8 H 0.023 0.977 9 C 0.104 3.896 10 H 0.031 0.969 11 C -0.150 4.150 12 C -0.044 4.044 13 N -0.558 5.558 14 H 0.425 0.575 15 C -0.009 4.009 16 C -0.197 4.197 17 C -0.031 4.031 18 C -0.068 4.068 19 C -0.105 4.105 20 C -0.167 4.167 21 C -0.185 4.185 22 H 0.262 0.738 23 H 0.151 0.849 24 H 0.195 0.805 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.547 -5.566 1.610 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.183 4.183 3 Si 0.757 3.243 4 H -0.191 1.191 5 H -0.173 1.173 6 H -0.218 1.218 7 C -0.508 4.508 8 H 0.042 0.958 9 C 0.084 3.916 10 H 0.049 0.951 11 C -0.157 4.157 12 C -0.173 4.173 13 N -0.156 5.156 14 H 0.263 0.737 15 C -0.140 4.140 16 C -0.204 4.204 17 C -0.068 4.068 18 C -0.105 4.105 19 C -0.106 4.106 20 C -0.204 4.204 21 C -0.222 4.222 22 H 0.071 0.929 23 H 0.168 0.832 24 H 0.212 0.788 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.117 0.883 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.426 -5.449 1.778 14.598 hybrid contribution -0.598 1.155 0.502 1.394 sum 12.827 -4.294 2.280 13.718 Atomic orbital electron populations 1.70058 1.08032 1.27482 1.54159 1.25810 0.95272 1.02185 0.95038 0.85983 0.79271 0.79592 0.79441 1.19135 1.17344 1.21784 1.20947 0.90829 0.92200 1.46853 0.95819 1.17384 0.92382 0.93056 0.88739 0.95059 1.19980 1.03135 0.97634 0.94938 1.21260 1.07376 0.95600 0.93058 1.41823 1.48799 1.14473 1.10461 0.73655 1.21788 1.07820 0.95812 0.88571 1.19735 1.07857 0.96768 0.96085 1.19846 0.98948 0.97464 0.90573 1.20956 0.98613 0.91893 0.99065 1.21632 1.00807 0.94997 0.93131 1.22999 0.90657 1.02697 1.04027 1.22813 0.99541 1.01496 0.98338 0.92937 0.83150 0.78809 0.90479 0.90584 0.90849 0.94666 0.90402 0.87027 0.88296 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.17 13.96 21.45 0.30 -60.87 16 2 C 0.01 0.73 5.47 84.65 0.46 1.20 16 3 Si 0.93 45.60 27.25 68.60 1.87 47.46 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.25 -11.50 6.39 99.48 0.64 -10.86 16 6 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 7 C -0.47 -27.48 8.61 25.60 0.22 -27.26 16 8 H 0.02 1.57 7.94 -2.91 -0.02 1.55 16 9 C 0.10 5.04 2.19 -12.01 -0.03 5.01 16 10 H 0.03 1.56 4.45 -2.39 -0.01 1.55 16 11 C -0.15 -6.56 5.20 -19.98 -0.10 -6.67 16 12 C -0.04 -1.71 11.90 82.99 0.99 -0.72 16 13 N -0.56 -16.44 6.09 -195.16 -1.19 -17.63 16 14 H 0.42 8.81 8.96 -92.71 -0.83 7.98 16 15 C -0.01 -0.27 11.89 83.05 0.99 0.72 16 16 C -0.20 -7.22 5.89 -20.02 -0.12 -7.34 16 17 C -0.03 -0.97 6.27 29.96 0.19 -0.79 16 18 C -0.07 -2.52 5.55 30.79 0.17 -2.35 16 19 C -0.11 -4.40 1.26 -52.05 -0.07 -4.46 16 20 C -0.17 -5.84 9.93 30.54 0.30 -5.54 16 21 C -0.18 -7.37 9.89 30.53 0.30 -7.07 16 22 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 23 H 0.15 5.77 8.06 -2.91 -0.02 5.75 16 24 H 0.20 3.89 8.06 -2.91 -0.02 3.86 16 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.07 2.29 8.09 -2.39 -0.02 2.27 16 28 H 0.03 1.53 7.86 -2.38 -0.02 1.51 16 29 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.10 3.49 8.14 -2.39 -0.02 3.48 16 32 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -71.04 262.52 4.50 -66.54 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.21 Total: 19.76 kcal Atomic # 6 Polarization: -58.58 SS G_CDS: 3.31 Total: -55.28 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -0.89 Total: -78.49 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.87 Total: 47.46 kcal Total: -71.04 4.50 -66.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260910879.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.182 kcal (2) G-P(sol) polarization free energy of solvation -71.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds