Wall clock time and date at job start Mon Mar 30 2020 03:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47566 * 2 1 4 4 C 1.50709 * 109.46921 * 240.00569 * 2 1 3 5 5 H 1.07999 * 119.99535 * 240.00092 * 4 2 1 6 6 C 1.37873 * 119.99874 * 59.99706 * 4 2 1 7 7 N 1.31517 * 119.99979 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46710 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47125 * 120.00033 * 8 6 4 11 11 H 1.48505 * 109.46952 * 240.00494 * 8 6 4 12 12 C 1.50697 * 109.47390 * 120.00848 * 2 1 3 13 13 C 1.40199 * 119.81105 * 34.99175 * 12 2 1 14 14 C 1.35577 * 119.32763 * 179.74655 * 13 12 2 15 15 N 1.36458 * 119.07548 * 0.26447 * 14 13 12 16 16 C 1.36841 * 132.73609 * 179.97438 * 15 14 13 17 17 C 1.35000 * 107.09728 * 180.02562 * 16 15 14 18 18 N 1.33639 * 108.62433 * 359.97438 * 17 16 15 19 19 C 1.32518 * 109.25736 * 359.97438 * 18 17 16 20 20 N 1.31229 * 119.81165 * 215.25675 * 12 2 1 21 21 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46819 * 299.99569 * 1 2 3 23 23 H 1.08996 * 109.47187 * 59.99059 * 1 2 3 24 24 H 0.97002 * 119.99492 * 179.97438 * 7 6 4 25 25 H 1.08002 * 120.33942 * 0.03342 * 13 12 2 26 26 H 1.08002 * 120.46544 * 180.23430 * 14 13 12 27 27 H 1.07999 * 126.45222 * 0.03906 * 16 15 14 28 28 H 1.07998 * 125.69187 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1192 -4.0082 9 1 3.1473 -2.2860 -3.6040 10 1 1.1676 -1.5862 -4.8167 11 1 3.1471 -0.1853 -4.8162 12 6 2.0324 -0.7106 1.2303 13 6 1.3252 -1.8094 1.7382 14 6 1.7888 -2.4447 2.8425 15 7 2.9317 -1.9937 3.4362 16 6 3.6345 -2.4100 4.5341 17 6 4.6972 -1.5872 4.6606 18 7 4.6597 -0.6868 3.6737 19 6 3.5966 -0.9133 2.9156 20 7 3.1264 -0.2940 1.8232 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 0.7093 1.1621 -3.4843 25 1 0.4227 -2.1494 1.2519 26 1 1.2606 -3.2954 3.2472 27 1 3.3859 -3.2407 5.1780 28 1 5.4518 -1.6465 5.4309 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992408.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:47 Heat of formation + Delta-G solvation = 101.527144 kcal Electronic energy + Delta-G solvation = -13942.057705 eV Core-core repulsion = 11573.741190 eV Total energy + Delta-G solvation = -2368.316516 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.51699 -38.13839 -34.62975 -33.63469 -31.29459 -29.82010 -28.25792 -25.33383 -23.97006 -23.16351 -21.46349 -20.13615 -17.93377 -16.97150 -16.31601 -15.73624 -15.43172 -14.46505 -14.10495 -13.77399 -13.41721 -13.02076 -12.33093 -11.81408 -11.53003 -11.43174 -11.03156 -10.73882 -10.53859 -10.32029 -10.15639 -9.87857 -9.19783 -9.05559 -8.68144 -8.47516 -7.66517 -6.13180 -4.21144 1.05915 1.56814 2.81146 3.10440 3.24712 3.33380 3.37565 4.10604 4.18285 4.38782 4.60714 4.82851 5.16255 5.19338 5.52775 5.57337 5.77689 5.94455 6.17836 6.56222 6.65683 6.82051 6.89328 6.92627 7.12065 7.53262 7.69855 7.90517 8.08703 8.15841 8.58821 8.78957 9.43767 10.92813 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.045750 B = 0.007784 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.874424 B = 3596.107317 C = 3760.503923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.058 0.942 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.246 3.754 13 C -0.178 4.178 14 C 0.083 3.917 15 N -0.404 5.404 16 C -0.124 4.124 17 C 0.040 3.960 18 N -0.495 5.495 19 C 0.395 3.605 20 N -0.455 5.455 21 H 0.034 0.966 22 H 0.014 0.986 23 H 0.095 0.905 24 H 0.264 0.736 25 H 0.166 0.834 26 H 0.167 0.833 27 H 0.177 0.823 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -7.682 9.995 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.076 0.924 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.080 3.920 13 C -0.201 4.201 14 C -0.048 4.048 15 N -0.082 5.082 16 C -0.255 4.255 17 C -0.113 4.113 18 N -0.218 5.218 19 C 0.046 3.954 20 N -0.168 5.168 21 H 0.053 0.947 22 H 0.033 0.967 23 H 0.113 0.887 24 H 0.073 0.927 25 H 0.184 0.816 26 H 0.184 0.816 27 H 0.194 0.806 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.380 -6.259 9.636 11.497 hybrid contribution -0.669 -1.954 -0.288 2.085 sum -1.049 -8.213 9.348 12.488 Atomic orbital electron populations 1.21897 0.96640 0.99697 1.01283 1.18003 0.92972 0.96728 0.86018 0.92420 1.20845 1.31964 1.12690 0.89164 0.92494 1.24889 0.94795 0.94915 0.98922 1.69876 1.36195 1.22481 1.23760 0.86418 0.78657 0.79684 0.82584 1.19779 1.20854 1.20754 1.22918 0.85890 0.89782 0.93395 1.22000 1.03792 0.98280 0.96010 1.22083 0.87390 1.00069 0.95270 1.44041 1.18462 1.24478 1.21188 1.22375 0.99273 1.08045 0.95811 1.22456 0.97971 0.92710 0.98152 1.70695 1.17390 1.26795 1.06873 1.22408 0.91916 0.86342 0.94713 1.68028 1.14620 1.28847 1.05327 0.94692 0.96694 0.88661 0.92650 0.81631 0.81557 0.80603 0.80336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.40 37.16 0.31 -2.64 15 2 C 0.08 1.99 2.63 -92.92 -0.24 1.74 15 3 H 0.06 1.56 8.14 -51.93 -0.42 1.14 15 4 C -0.51 -13.37 8.55 -34.44 -0.29 -13.67 15 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 15 7 N -0.89 -23.97 11.32 55.43 0.63 -23.35 15 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 15 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 12 C 0.25 5.36 5.76 -82.12 -0.47 4.89 15 13 C -0.18 -3.04 9.13 -39.80 -0.36 -3.41 15 14 C 0.08 1.23 11.07 -16.44 -0.18 1.04 15 15 N -0.40 -7.00 2.95 -64.40 -0.19 -7.19 15 16 C -0.12 -1.75 11.77 -16.47 -0.19 -1.95 15 17 C 0.04 0.62 11.83 -17.92 -0.21 0.40 15 18 N -0.49 -10.29 11.31 -14.46 -0.16 -10.45 15 19 C 0.40 8.54 8.92 -322.53 -2.88 5.66 15 20 N -0.46 -10.78 10.40 -9.93 -0.10 -10.88 15 21 H 0.03 0.67 6.52 -51.93 -0.34 0.33 15 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 15 23 H 0.09 2.29 6.07 -51.93 -0.32 1.97 15 24 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 25 H 0.17 2.42 6.37 -52.49 -0.33 2.09 15 26 H 0.17 1.60 8.06 -52.49 -0.42 1.18 15 27 H 0.18 1.68 8.06 -52.49 -0.42 1.25 15 28 H 0.18 1.98 8.06 -52.49 -0.42 1.56 15 LS Contribution 245.66 15.07 3.70 3.70 Total: -1.00 -31.37 245.66 -8.41 -39.78 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -2.64 Total: -0.99 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -4.62 Total: -6.24 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.17 Total: -51.87 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.37 -8.41 -39.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992408.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.312 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds