Wall clock time and date at job start Mon Mar 30 2020 03:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47566 * 2 1 4 4 C 1.50709 * 109.46921 * 240.00569 * 2 1 3 5 5 H 1.07999 * 119.99535 * 240.00092 * 4 2 1 6 6 C 1.37873 * 119.99874 * 59.99706 * 4 2 1 7 7 N 1.31517 * 119.99979 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46710 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47125 * 120.00033 * 8 6 4 11 11 H 1.48505 * 109.46952 * 240.00494 * 8 6 4 12 12 C 1.50697 * 109.47390 * 120.00848 * 2 1 3 13 13 C 1.40199 * 119.81105 * 34.99175 * 12 2 1 14 14 C 1.35577 * 119.32763 * 179.74655 * 13 12 2 15 15 N 1.36458 * 119.07548 * 0.26447 * 14 13 12 16 16 C 1.36841 * 132.73609 * 179.97438 * 15 14 13 17 17 C 1.35000 * 107.09728 * 180.02562 * 16 15 14 18 18 N 1.33639 * 108.62433 * 359.97438 * 17 16 15 19 19 C 1.32518 * 109.25736 * 359.97438 * 18 17 16 20 20 N 1.31229 * 119.81165 * 215.25675 * 12 2 1 21 21 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46819 * 299.99569 * 1 2 3 23 23 H 1.08996 * 109.47187 * 59.99059 * 1 2 3 24 24 H 0.97002 * 119.99492 * 179.97438 * 7 6 4 25 25 H 1.08002 * 120.33942 * 0.03342 * 13 12 2 26 26 H 1.08002 * 120.46544 * 180.23430 * 14 13 12 27 27 H 1.07999 * 126.45222 * 0.03906 * 16 15 14 28 28 H 1.07998 * 125.69187 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1192 -4.0082 9 1 3.1473 -2.2860 -3.6040 10 1 1.1676 -1.5862 -4.8167 11 1 3.1471 -0.1853 -4.8162 12 6 2.0324 -0.7106 1.2303 13 6 1.3252 -1.8094 1.7382 14 6 1.7888 -2.4447 2.8425 15 7 2.9317 -1.9937 3.4362 16 6 3.6345 -2.4100 4.5341 17 6 4.6972 -1.5872 4.6606 18 7 4.6597 -0.6868 3.6737 19 6 3.5966 -0.9133 2.9156 20 7 3.1264 -0.2940 1.8232 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 0.7093 1.1621 -3.4843 25 1 0.4227 -2.1494 1.2519 26 1 1.2606 -3.2954 3.2472 27 1 3.3859 -3.2407 5.1780 28 1 5.4518 -1.6465 5.4309 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992408.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:47 Heat of formation + Delta-G solvation = 83.254692 kcal Electronic energy + Delta-G solvation = -13942.850058 eV Core-core repulsion = 11573.741190 eV Total energy + Delta-G solvation = -2369.108869 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.83550 -39.58499 -36.25698 -35.23522 -33.06090 -31.23849 -29.63133 -27.28041 -25.44930 -24.58834 -22.71856 -21.80549 -19.27190 -18.59118 -18.00671 -17.12815 -17.04758 -16.10063 -15.38177 -14.99314 -14.85316 -14.64258 -13.87105 -13.55090 -13.21495 -12.86418 -12.83511 -12.52628 -12.29798 -12.11262 -11.97687 -11.33029 -11.05043 -10.63050 -10.41088 -10.00932 -8.98523 -8.13767 -6.29178 -0.23024 0.18833 1.41536 1.44719 1.55063 1.59122 1.91912 2.40153 2.71930 2.78144 3.15384 3.51776 3.65153 3.92243 4.34055 4.46349 4.56780 4.62814 4.79933 4.95506 5.08643 5.13811 5.32282 5.51294 5.65463 5.75451 5.87600 6.03006 6.22212 6.73822 6.75384 7.16963 7.38715 8.91174 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.045750 B = 0.007784 C = 0.007444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.874424 B = 3596.107317 C = 3760.503923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.082 3.918 3 H 0.007 0.993 4 C -0.521 4.521 5 H 0.045 0.955 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.959 3.041 9 H -0.273 1.273 10 H -0.269 1.269 11 H -0.284 1.284 12 C 0.223 3.777 13 C -0.196 4.196 14 C 0.113 3.887 15 N -0.408 5.408 16 C -0.090 4.090 17 C 0.021 3.979 18 N -0.538 5.538 19 C 0.349 3.651 20 N -0.511 5.511 21 H 0.059 0.941 22 H 0.031 0.969 23 H 0.067 0.933 24 H 0.266 0.734 25 H 0.190 0.810 26 H 0.234 0.766 27 H 0.236 0.764 28 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 -10.848 11.880 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.062 3.938 3 H 0.025 0.975 4 C -0.560 4.560 5 H 0.063 0.937 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.194 1.194 11 H -0.210 1.210 12 C 0.059 3.941 13 C -0.219 4.219 14 C -0.018 4.018 15 N -0.086 5.086 16 C -0.220 4.220 17 C -0.129 4.129 18 N -0.262 5.262 19 C 0.000 4.000 20 N -0.225 5.225 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.207 0.793 26 H 0.250 0.750 27 H 0.252 0.748 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.054 -9.429 11.525 14.928 hybrid contribution -0.351 -0.993 -0.689 1.259 sum -1.405 -10.423 10.836 15.100 Atomic orbital electron populations 1.21692 0.94666 1.01076 1.00649 1.17798 0.94562 0.94138 0.87280 0.97535 1.21036 1.31889 1.12518 0.90580 0.93671 1.25619 0.94972 0.95580 1.01524 1.69998 1.36964 1.23482 1.24394 0.85493 0.78371 0.78409 0.79273 1.19798 1.19369 1.21050 1.22591 0.86679 0.91746 0.93082 1.22059 1.04652 0.97537 0.97625 1.22971 0.85596 0.99908 0.93288 1.44279 1.19053 1.23515 1.21724 1.23379 0.97091 1.07651 0.93922 1.23284 0.99760 0.91989 0.97879 1.70596 1.18093 1.29093 1.08457 1.22218 0.93505 0.88763 0.95480 1.67746 1.16114 1.31281 1.07393 0.92164 0.95009 0.91444 0.92495 0.79264 0.74981 0.74755 0.76503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.40 71.98 0.60 -4.77 15 2 C 0.08 4.15 2.63 -12.29 -0.03 4.11 15 3 H 0.01 0.39 8.14 -2.39 -0.02 0.37 15 4 C -0.52 -28.47 8.55 25.60 0.22 -28.25 15 5 H 0.04 2.50 7.74 -2.91 -0.02 2.48 15 6 C 0.02 1.24 5.30 84.65 0.45 1.69 15 7 N -0.91 -50.86 11.32 21.45 0.24 -50.62 15 8 Si 0.96 42.95 29.54 68.60 2.03 44.98 15 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 12 C 0.22 10.02 5.76 43.12 0.25 10.26 15 13 C -0.20 -6.34 9.13 22.13 0.20 -6.13 15 14 C 0.11 2.83 11.07 83.36 0.92 3.75 15 15 N -0.41 -12.81 2.95 -357.67 -1.05 -13.87 15 16 C -0.09 -2.10 11.77 83.17 0.98 -1.12 15 17 C 0.02 0.60 11.83 83.67 0.99 1.59 15 18 N -0.54 -22.30 11.31 -199.65 -2.26 -24.56 15 19 C 0.35 15.13 8.92 261.39 2.33 17.46 15 20 N -0.51 -25.31 10.40 -185.32 -1.93 -27.23 15 21 H 0.06 2.27 6.52 -2.39 -0.02 2.26 15 22 H 0.03 1.23 8.14 -2.38 -0.02 1.21 15 23 H 0.07 3.34 6.07 -2.39 -0.01 3.32 15 24 H 0.27 14.01 8.31 -92.71 -0.77 13.24 15 25 H 0.19 4.99 6.37 -2.91 -0.02 4.97 15 26 H 0.23 2.65 8.06 -2.91 -0.02 2.63 15 27 H 0.24 2.55 8.06 -2.91 -0.02 2.52 15 28 H 0.22 3.98 8.06 -2.91 -0.02 3.95 15 Total: -1.00 -75.02 245.66 5.11 -69.91 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 1.17 Total: 2.80 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 6.91 Total: -1.41 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -5.00 Total: -116.28 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -75.02 5.11 -69.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992408.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.165 kcal (2) G-P(sol) polarization free energy of solvation -75.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds