Wall clock time and date at job start Mon Mar 30 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47035 * 2 1 4 4 N 1.32823 * 125.23764 * 269.71458 * 3 2 1 5 5 C 1.32028 * 109.67689 * 180.26736 * 4 3 2 6 6 C 1.46976 * 133.24788 * 180.02562 * 5 4 3 7 7 C 1.40486 * 120.96763 * 359.95021 * 6 5 4 8 8 H 1.07998 * 119.99928 * 330.55014 * 7 6 5 9 9 C 1.40046 * 120.00029 * 150.54420 * 7 6 5 10 10 N 1.30817 * 120.00146 * 161.68319 * 9 7 6 11 11 Si 1.86803 * 119.99931 * 341.68343 * 9 7 6 12 12 H 1.48502 * 109.47085 * 95.39908 * 11 9 7 13 13 H 1.48494 * 109.46961 * 215.39645 * 11 9 7 14 14 H 1.48494 * 109.47016 * 335.39949 * 11 9 7 15 15 C 1.40688 * 118.07032 * 179.97438 * 6 5 4 16 16 C 1.39024 * 119.08790 * 359.97438 * 15 6 5 17 17 C 1.35787 * 121.12734 * 0.02562 * 16 15 6 18 18 N 1.36000 * 121.88312 * 359.95912 * 17 16 15 19 19 N 1.31121 * 125.23098 * 90.02640 * 3 2 1 20 20 H 1.08993 * 109.47254 * 299.99827 * 1 2 3 21 21 H 1.09002 * 109.46911 * 60.00029 * 1 2 3 22 22 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47162 * 240.00186 * 2 1 3 24 24 H 1.09002 * 109.46911 * 119.99970 * 2 1 3 25 25 H 0.96994 * 119.99841 * 180.02562 * 10 9 7 26 26 H 1.08001 * 120.45968 * 180.02562 * 15 6 5 27 27 H 1.08000 * 119.43726 * 179.97438 * 16 15 6 28 28 H 1.07996 * 119.05917 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2928 2.1415 -1.0848 5 6 2.7206 3.3393 -0.7306 6 6 3.1454 4.5227 -1.4918 7 6 3.1470 4.5163 -2.8967 8 1 3.3067 3.5922 -3.4323 9 6 2.9414 5.7082 -3.6025 10 7 3.2887 5.7914 -4.8610 11 14 2.1710 7.1794 -2.7471 12 1 3.2422 8.0815 -2.2531 13 1 1.3085 7.9143 -3.7067 14 1 1.3502 6.7118 -1.6013 15 6 3.5509 5.6619 -0.7727 16 6 3.5339 5.6254 0.6169 17 6 3.1346 4.5128 1.2851 18 7 2.7340 3.3884 0.6332 19 7 2.2849 2.1338 1.0710 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.1467 6.6171 -5.3498 26 1 3.8701 6.5528 -1.2930 27 1 3.8444 6.4966 1.1746 28 1 3.1342 4.5213 2.3650 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011874.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:00 Heat of formation + Delta-G solvation = 93.273513 kcal Electronic energy + Delta-G solvation = -13988.776238 eV Core-core repulsion = 11620.101818 eV Total energy + Delta-G solvation = -2368.674420 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.33413 -36.74442 -34.41092 -33.04776 -32.06896 -29.36177 -29.18476 -25.57095 -23.90516 -22.42314 -21.10297 -19.64199 -18.06620 -16.44507 -15.97672 -15.33198 -14.94775 -14.54013 -13.79515 -13.53724 -13.21311 -12.63690 -12.35809 -11.99688 -11.81792 -11.31266 -11.18421 -11.05002 -10.78776 -10.62284 -10.22028 -10.02302 -9.82201 -9.26603 -9.02247 -8.34519 -7.38936 -7.29490 -4.76065 1.95128 2.18156 2.91359 3.01001 3.13302 3.33060 3.67326 3.74407 4.07557 4.74821 4.97068 5.18506 5.51432 5.59763 5.64533 5.88600 6.03198 6.07975 6.16034 6.26419 6.47417 6.57557 6.66495 7.01650 7.14894 7.40418 7.45517 7.61398 7.90403 8.05974 8.11241 8.31930 9.13895 9.58297 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.010277 C = 0.008632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.938452 B = 2723.813103 C = 3243.137991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.020 4.020 3 C 0.209 3.791 4 N -0.539 5.539 5 C 0.249 3.751 6 C 0.112 3.888 7 C -0.366 4.366 8 H 0.108 0.892 9 C 0.078 3.922 10 N -0.766 5.766 11 Si 0.925 3.075 12 H -0.262 1.262 13 H -0.286 1.286 14 H -0.241 1.241 15 C -0.309 4.309 16 C -0.053 4.053 17 C -0.091 4.091 18 N -0.247 5.247 19 N -0.367 5.367 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.297 0.703 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 -0.854 4.825 5.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 C -0.071 4.071 4 N -0.269 5.269 5 C -0.009 4.009 6 C 0.105 3.895 7 C -0.393 4.393 8 H 0.126 0.874 9 C -0.147 4.147 10 N -0.387 5.387 11 Si 0.750 3.250 12 H -0.188 1.188 13 H -0.214 1.214 14 H -0.164 1.164 15 C -0.335 4.335 16 C -0.075 4.075 17 C -0.216 4.216 18 N -0.020 5.020 19 N -0.202 5.202 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.104 0.896 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.438 -1.250 4.927 5.638 hybrid contribution -0.103 0.985 0.234 1.017 sum -2.541 -0.265 5.161 5.759 Atomic orbital electron populations 1.21690 0.94450 1.01464 1.02493 1.19707 0.95892 0.87242 1.03131 1.23993 0.99102 0.97698 0.86275 1.70326 1.24830 1.02435 1.29321 1.23174 1.00289 0.95095 0.82296 1.17837 0.92249 0.86553 0.92856 1.19530 1.33184 0.97058 0.89484 0.87418 1.26444 0.92874 1.00449 0.94900 1.69642 1.29916 1.29291 1.09802 0.86010 0.80230 0.78868 0.79862 1.18800 1.21356 1.16395 1.20659 1.19458 1.00375 0.92977 1.20064 0.97429 0.95341 0.94650 1.20208 1.18325 0.86138 0.96964 1.46947 1.38865 1.09324 1.06878 1.78038 1.29564 0.90650 1.21967 0.92725 0.92156 0.92137 0.89645 0.90357 0.89233 0.86418 0.85762 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.89 37.16 0.37 -1.69 15 2 C -0.02 -0.33 6.56 -27.88 -0.18 -0.51 15 3 C 0.21 4.69 7.35 -156.88 -1.15 3.54 15 4 N -0.54 -13.70 11.23 -8.59 -0.10 -13.80 15 5 C 0.25 6.49 7.87 -154.54 -1.22 5.27 15 6 C 0.11 2.84 5.27 -104.59 -0.55 2.29 15 7 C -0.37 -9.50 9.62 -38.06 -0.37 -9.87 15 8 H 0.11 2.99 8.06 -52.49 -0.42 2.57 15 9 C 0.08 1.88 5.42 -17.31 -0.09 1.79 15 10 N -0.77 -18.48 13.93 55.55 0.77 -17.71 15 11 Si 0.93 19.15 24.54 -169.99 -4.17 14.98 15 12 H -0.26 -5.12 6.71 56.52 0.38 -4.74 15 13 H -0.29 -5.67 7.11 56.52 0.40 -5.26 15 14 H -0.24 -5.26 6.86 56.52 0.39 -4.87 15 15 C -0.31 -7.04 7.30 -38.37 -0.28 -7.32 15 16 C -0.05 -1.08 9.91 -40.17 -0.40 -1.48 15 17 C -0.09 -1.97 11.15 -16.58 -0.18 -2.16 15 18 N -0.25 -6.07 3.90 -10.67 -0.04 -6.12 15 19 N -0.37 -8.69 12.78 32.41 0.41 -8.28 15 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 24 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 25 H 0.30 6.32 8.30 -40.82 -0.34 5.98 15 26 H 0.12 2.55 4.77 -52.49 -0.25 2.30 15 27 H 0.12 2.00 8.06 -52.49 -0.42 1.58 15 28 H 0.13 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 245.35 15.07 3.70 3.70 Total: -1.00 -28.68 245.35 -6.29 -34.97 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -2.80 Total: 2.40 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -4.06 Total: -10.14 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 1.05 Total: -45.90 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.17 Total: 14.98 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.68 -6.29 -34.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011874.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.243 kcal (2) G-P(sol) polarization free energy of solvation -28.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds