Wall clock time and date at job start Mon Mar 30 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47035 * 2 1 4 4 N 1.32823 * 125.23764 * 269.71458 * 3 2 1 5 5 C 1.32028 * 109.67689 * 180.26736 * 4 3 2 6 6 C 1.46976 * 133.24788 * 180.02562 * 5 4 3 7 7 C 1.40486 * 120.96763 * 359.95021 * 6 5 4 8 8 H 1.07998 * 119.99928 * 330.55014 * 7 6 5 9 9 C 1.40046 * 120.00029 * 150.54420 * 7 6 5 10 10 N 1.30817 * 120.00146 * 161.68319 * 9 7 6 11 11 Si 1.86803 * 119.99931 * 341.68343 * 9 7 6 12 12 H 1.48502 * 109.47085 * 95.39908 * 11 9 7 13 13 H 1.48494 * 109.46961 * 215.39645 * 11 9 7 14 14 H 1.48494 * 109.47016 * 335.39949 * 11 9 7 15 15 C 1.40688 * 118.07032 * 179.97438 * 6 5 4 16 16 C 1.39024 * 119.08790 * 359.97438 * 15 6 5 17 17 C 1.35787 * 121.12734 * 0.02562 * 16 15 6 18 18 N 1.36000 * 121.88312 * 359.95912 * 17 16 15 19 19 N 1.31121 * 125.23098 * 90.02640 * 3 2 1 20 20 H 1.08993 * 109.47254 * 299.99827 * 1 2 3 21 21 H 1.09002 * 109.46911 * 60.00029 * 1 2 3 22 22 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47162 * 240.00186 * 2 1 3 24 24 H 1.09002 * 109.46911 * 119.99970 * 2 1 3 25 25 H 0.96994 * 119.99841 * 180.02562 * 10 9 7 26 26 H 1.08001 * 120.45968 * 180.02562 * 15 6 5 27 27 H 1.08000 * 119.43726 * 179.97438 * 16 15 6 28 28 H 1.07996 * 119.05917 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2928 2.1415 -1.0848 5 6 2.7206 3.3393 -0.7306 6 6 3.1454 4.5227 -1.4918 7 6 3.1470 4.5163 -2.8967 8 1 3.3067 3.5922 -3.4323 9 6 2.9414 5.7082 -3.6025 10 7 3.2887 5.7914 -4.8610 11 14 2.1710 7.1794 -2.7471 12 1 3.2422 8.0815 -2.2531 13 1 1.3085 7.9143 -3.7067 14 1 1.3502 6.7118 -1.6013 15 6 3.5509 5.6619 -0.7727 16 6 3.5339 5.6254 0.6169 17 6 3.1346 4.5128 1.2851 18 7 2.7340 3.3884 0.6332 19 7 2.2849 2.1338 1.0710 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.1467 6.6171 -5.3498 26 1 3.8701 6.5528 -1.2930 27 1 3.8444 6.4966 1.1746 28 1 3.1342 4.5213 2.3650 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011874.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:00 Heat of formation + Delta-G solvation = 75.799857 kcal Electronic energy + Delta-G solvation = -13989.533953 eV Core-core repulsion = 11620.101818 eV Total energy + Delta-G solvation = -2369.432135 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.14163 -38.50534 -36.18137 -34.50367 -33.85661 -31.17631 -30.86500 -27.37261 -25.35176 -24.23428 -22.84068 -21.32026 -19.85559 -18.26803 -17.76533 -17.04345 -16.72705 -16.17954 -15.23774 -14.99065 -14.81471 -14.35255 -13.93564 -13.66303 -13.50783 -12.89923 -12.77982 -12.52354 -12.30876 -12.11784 -11.95962 -11.73938 -11.59052 -11.02008 -10.85742 -10.09535 -9.15628 -9.12506 -6.63242 0.17710 0.34371 1.25879 1.37691 1.49346 1.59434 1.94374 2.06327 2.31109 3.06568 3.17884 3.51983 3.96588 4.21520 4.38087 4.38575 4.48903 4.65262 4.76330 4.88265 4.96541 5.12725 5.24128 5.29530 5.38315 5.58822 5.73020 5.84306 6.01036 6.26151 6.30124 6.44232 7.32677 7.89495 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.010277 C = 0.008632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.938452 B = 2723.813103 C = 3243.137991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.022 4.022 3 C 0.209 3.791 4 N -0.575 5.575 5 C 0.213 3.787 6 C 0.093 3.907 7 C -0.411 4.411 8 H 0.064 0.936 9 C 0.050 3.950 10 N -0.803 5.803 11 Si 0.976 3.024 12 H -0.232 1.232 13 H -0.271 1.271 14 H -0.259 1.259 15 C -0.297 4.297 16 C -0.050 4.050 17 C -0.085 4.085 18 N -0.258 5.258 19 N -0.382 5.382 20 H 0.048 0.952 21 H 0.040 0.960 22 H 0.100 0.900 23 H 0.094 0.906 24 H 0.103 0.897 25 H 0.309 0.691 26 H 0.133 0.867 27 H 0.180 0.820 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 0.349 7.184 7.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C -0.070 4.070 4 N -0.306 5.306 5 C -0.043 4.043 6 C 0.086 3.914 7 C -0.438 4.438 8 H 0.082 0.918 9 C -0.171 4.171 10 N -0.425 5.425 11 Si 0.796 3.204 12 H -0.156 1.156 13 H -0.197 1.197 14 H -0.183 1.183 15 C -0.323 4.323 16 C -0.071 4.071 17 C -0.210 4.210 18 N -0.031 5.031 19 N -0.217 5.217 20 H 0.067 0.933 21 H 0.060 0.940 22 H 0.119 0.881 23 H 0.113 0.887 24 H 0.121 0.879 25 H 0.120 0.880 26 H 0.150 0.850 27 H 0.198 0.802 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.659 -0.061 7.273 7.744 hybrid contribution -0.005 0.524 -0.305 0.607 sum -2.664 0.464 6.967 7.474 Atomic orbital electron populations 1.21650 0.92683 1.03700 1.01238 1.20039 0.97288 0.84077 1.04768 1.25072 0.97387 0.99407 0.85135 1.70325 1.26203 1.03170 1.30933 1.23453 1.01715 0.95845 0.83286 1.18107 0.92787 0.87685 0.92808 1.19322 1.37790 0.96490 0.90159 0.91819 1.27086 0.92641 1.02061 0.95350 1.69634 1.31279 1.30752 1.10860 0.85296 0.80042 0.76390 0.78628 1.15633 1.19735 1.18325 1.21057 1.17147 0.99675 0.94382 1.20675 0.95949 0.96722 0.93786 1.21134 1.15688 0.85317 0.98896 1.47335 1.38801 1.10305 1.06677 1.77986 1.30622 0.90682 1.22458 0.93280 0.94048 0.88133 0.88729 0.87909 0.87971 0.84971 0.80234 0.81378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.89 71.98 0.71 -2.94 15 2 C -0.02 -0.70 6.56 29.85 0.20 -0.50 15 3 C 0.21 9.41 7.35 138.64 1.02 10.43 15 4 N -0.57 -30.19 11.23 -181.10 -2.03 -32.22 15 5 C 0.21 11.30 7.87 136.09 1.07 12.37 15 6 C 0.09 4.78 5.27 -19.84 -0.10 4.68 15 7 C -0.41 -22.49 9.62 23.26 0.22 -22.27 15 8 H 0.06 3.89 8.06 -2.91 -0.02 3.87 15 9 C 0.05 2.44 5.42 85.28 0.46 2.90 15 10 N -0.80 -39.97 13.93 21.85 0.30 -39.66 15 11 Si 0.98 38.25 24.54 68.60 1.68 39.93 15 12 H -0.23 -7.97 6.71 99.48 0.67 -7.30 15 13 H -0.27 -9.90 7.11 99.48 0.71 -9.20 15 14 H -0.26 -10.84 6.86 99.48 0.68 -10.16 15 15 C -0.30 -12.90 7.30 23.06 0.17 -12.73 15 16 C -0.05 -1.83 9.91 21.89 0.22 -1.62 15 17 C -0.09 -3.39 11.15 83.48 0.93 -2.46 15 18 N -0.26 -12.45 3.90 -187.68 -0.73 -13.18 15 19 N -0.38 -17.79 12.78 -51.36 -0.66 -18.45 15 20 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.04 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.10 1.94 8.14 -2.38 -0.02 1.92 15 23 H 0.09 2.82 8.14 -2.39 -0.02 2.80 15 24 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 25 H 0.31 13.34 8.30 -92.71 -0.77 12.57 15 26 H 0.13 5.32 4.77 -2.91 -0.01 5.31 15 27 H 0.18 4.58 8.06 -2.91 -0.02 4.56 15 28 H 0.17 5.48 8.06 -2.91 -0.02 5.46 15 Total: -1.00 -65.14 245.35 4.57 -60.57 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 1.11 Total: 15.16 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 4.90 Total: -12.15 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -3.12 Total: -103.51 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 1.68 Total: 39.93 kcal Total: -65.14 4.57 -60.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011874.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.369 kcal (2) G-P(sol) polarization free energy of solvation -65.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds