Wall clock time and date at job start Mon Mar 30 2020 03:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47466 * 2 1 4 4 C 1.50700 * 109.46932 * 239.99574 * 2 1 3 5 5 H 1.08009 * 120.00170 * 245.34145 * 4 2 1 6 6 C 1.37873 * 119.99977 * 65.34648 * 4 2 1 7 7 N 1.31522 * 120.00272 * 185.19901 * 6 4 2 8 8 Si 1.86802 * 120.00073 * 5.19911 * 6 4 2 9 9 H 1.48500 * 109.47248 * 269.99873 * 8 6 4 10 10 H 1.48506 * 109.46930 * 30.00367 * 8 6 4 11 11 H 1.48502 * 109.47127 * 149.99956 * 8 6 4 12 12 C 1.50700 * 109.46918 * 120.00101 * 2 1 3 13 13 C 1.34958 * 119.74874 * 84.99667 * 12 2 1 14 14 C 1.40545 * 120.36530 * 180.02562 * 13 12 2 15 15 C 1.36017 * 119.74935 * 359.97438 * 14 13 12 16 16 C 1.40820 * 119.22701 * 359.97438 * 15 14 13 17 17 N 1.32306 * 133.46583 * 179.97438 * 16 15 14 18 18 N 1.28682 * 109.48112 * 180.02562 * 17 16 15 19 19 C 1.30807 * 110.29043 * 359.97438 * 18 17 16 20 20 N 1.36060 * 107.50735 * 359.79146 * 19 18 17 21 21 H 1.08999 * 109.47411 * 294.97093 * 1 2 3 22 22 H 1.09000 * 109.46918 * 54.96792 * 1 2 3 23 23 H 1.08998 * 109.47287 * 174.96546 * 1 2 3 24 24 H 0.96999 * 119.99487 * 355.00091 * 7 6 4 25 25 H 1.08005 * 119.81417 * 359.97438 * 13 12 2 26 26 H 1.08008 * 120.12329 * 179.97438 * 14 13 12 27 27 H 1.08006 * 120.38401 * 180.02562 * 15 14 13 28 28 H 1.07998 * 126.24353 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5803 -1.6362 -1.1336 6 6 1.7925 -0.1788 -2.4797 7 7 2.1401 -0.8481 -3.5571 8 14 0.9738 1.4924 -2.6420 9 1 -0.4995 1.3177 -2.7068 10 1 1.3219 2.3304 -1.4664 11 1 1.4483 2.1577 -3.8820 12 6 2.0323 -0.7104 1.2305 13 6 2.1592 -2.0540 1.2231 14 6 2.6258 -2.7299 2.3636 15 6 2.9515 -2.0245 3.4800 16 6 2.8148 -0.6230 3.4721 17 7 3.0417 0.3188 4.3733 18 7 2.7554 1.4693 3.8732 19 6 2.3353 1.3367 2.6415 20 7 2.3619 0.0101 2.3406 21 1 -0.3634 0.4338 0.9316 22 1 -0.3633 0.5899 -0.8415 23 1 -0.3634 -1.0237 -0.0902 24 1 2.6298 -1.6813 -3.4735 25 1 1.8998 -2.6130 0.3361 26 1 2.7254 -3.8053 2.3535 27 1 3.3115 -2.5334 4.3621 28 1 2.0274 2.1349 1.9825 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261023605.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:54 Heat of formation + Delta-G solvation = 98.379804 kcal Electronic energy + Delta-G solvation = -14247.449945 eV Core-core repulsion = 11878.996950 eV Total energy + Delta-G solvation = -2368.452995 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.13568 -38.21408 -34.96493 -33.34470 -31.67630 -30.19095 -28.51703 -25.08222 -24.01629 -23.00657 -22.48668 -19.85101 -18.24976 -17.27167 -16.57581 -16.07815 -15.59001 -14.62639 -14.34031 -13.62154 -13.15601 -12.79737 -12.46792 -12.04083 -11.80419 -11.56610 -11.41210 -11.02576 -10.85175 -10.79148 -10.30208 -10.06548 -9.98173 -9.14328 -8.97993 -8.71107 -7.61642 -6.70422 -4.41444 1.05198 1.51390 2.75810 3.10431 3.19099 3.24397 3.39434 3.71569 4.24672 4.44256 4.88417 4.97335 5.03015 5.17978 5.26074 5.33087 5.88540 5.95651 6.03243 6.14718 6.24906 6.37701 6.43033 6.51497 6.60577 6.78175 7.00823 7.26836 7.65444 8.08072 8.55868 8.85267 9.29758 10.69360 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.037887 B = 0.010349 C = 0.008780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.866205 B = 2704.942569 C = 3188.132427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 H 0.043 0.957 4 C -0.599 4.599 5 H 0.070 0.930 6 C 0.035 3.965 7 N -0.900 5.900 8 Si 1.052 2.948 9 H -0.280 1.280 10 H -0.280 1.280 11 H -0.286 1.286 12 C 0.151 3.849 13 C -0.151 4.151 14 C -0.068 4.068 15 C -0.121 4.121 16 C 0.196 3.804 17 N -0.313 5.313 18 N -0.263 5.263 19 C 0.114 3.886 20 N -0.385 5.385 21 H 0.029 0.971 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.271 0.729 25 H 0.162 0.838 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 -1.467 7.566 7.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.023 3.977 3 H 0.061 0.939 4 C -0.637 4.637 5 H 0.088 0.912 6 C -0.171 4.171 7 N -0.533 5.533 8 Si 0.881 3.119 9 H -0.207 1.207 10 H -0.206 1.206 11 H -0.212 1.212 12 C 0.047 3.953 13 C -0.171 4.171 14 C -0.093 4.093 15 C -0.142 4.142 16 C -0.053 4.053 17 N -0.160 5.160 18 N -0.103 5.103 19 C -0.169 4.169 20 N -0.063 5.063 21 H 0.048 0.952 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.179 0.821 26 H 0.158 0.842 27 H 0.166 0.834 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -2.136 0.463 7.829 8.128 hybrid contribution 0.281 -1.679 -0.199 1.714 sum -1.855 -1.215 7.630 7.945 Atomic orbital electron populations 1.22130 0.96712 1.01992 0.99239 1.18540 0.93047 0.96605 0.89474 0.93890 1.22018 1.40977 1.10764 0.89947 0.91197 1.25765 0.96156 1.03436 0.91740 1.70824 1.35610 1.16650 1.30205 0.83879 0.76523 0.75490 0.76031 1.20684 1.20575 1.21242 1.21071 0.95324 0.92374 0.86561 1.20913 1.03773 0.92411 1.00048 1.21286 0.95325 1.00706 0.91946 1.20052 1.05672 0.87804 1.00691 1.22399 1.02091 0.96256 0.84525 1.74845 1.23754 0.93793 1.23572 1.74099 1.12672 1.17569 1.05912 1.26298 1.09126 0.84652 0.96824 1.44019 1.41826 1.08271 1.12228 0.95222 0.92652 0.92175 0.91896 0.82080 0.84151 0.83430 0.76372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.76 37.16 0.33 -2.39 15 2 C 0.04 0.90 1.97 -92.92 -0.18 0.72 15 3 H 0.04 0.91 5.89 -51.93 -0.31 0.61 15 4 C -0.60 -14.70 8.32 -34.44 -0.29 -14.99 15 5 H 0.07 1.80 6.39 -52.48 -0.34 1.46 15 6 C 0.04 0.92 5.43 -17.82 -0.10 0.82 15 7 N -0.90 -25.36 13.70 55.43 0.76 -24.60 15 8 Si 1.05 23.06 25.29 -169.99 -4.30 18.76 15 9 H -0.28 -5.81 6.81 56.52 0.38 -5.42 15 10 H -0.28 -5.62 6.36 56.52 0.36 -5.26 15 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 12 C 0.15 2.90 5.80 -81.73 -0.47 2.43 15 13 C -0.15 -2.61 8.82 -39.88 -0.35 -2.96 15 14 C -0.07 -0.96 10.07 -39.51 -0.40 -1.36 15 15 C -0.12 -1.83 10.11 -39.40 -0.40 -2.22 15 16 C 0.20 3.67 7.92 -156.06 -1.24 2.43 15 17 N -0.31 -6.30 12.31 31.14 0.38 -5.92 15 18 N -0.26 -5.20 12.19 29.85 0.36 -4.84 15 19 C 0.11 2.07 12.31 -89.18 -1.10 0.97 15 20 N -0.38 -7.33 2.95 -59.78 -0.18 -7.50 15 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 22 H 0.05 1.06 4.40 -51.93 -0.23 0.83 15 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.27 7.56 8.72 -40.82 -0.36 7.20 15 25 H 0.16 2.83 6.55 -52.48 -0.34 2.48 15 26 H 0.14 1.46 8.06 -52.48 -0.42 1.03 15 27 H 0.15 1.78 8.06 -52.48 -0.42 1.36 15 28 H 0.22 3.25 7.75 -52.49 -0.41 2.84 15 LS Contribution 238.29 15.07 3.59 3.59 Total: -1.00 -29.08 238.29 -6.09 -35.17 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -2.52 Total: 1.90 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -4.20 Total: -16.55 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 1.33 Total: -42.87 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.30 Total: 18.76 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.08 -6.09 -35.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023605.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.551 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds