Wall clock time and date at job start Mon Mar 30 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.34950 * 119.74760 * 274.72383 * 12 2 1 14 14 C 1.40545 * 120.36433 * 179.73290 * 13 12 2 15 15 C 1.36023 * 119.74807 * 0.56089 * 14 13 12 16 16 C 1.40814 * 119.22527 * 359.72225 * 15 14 13 17 17 N 1.32314 * 133.46492 * 180.02562 * 16 15 14 18 18 N 1.28676 * 109.48131 * 179.97438 * 17 16 15 19 19 C 1.30809 * 110.29135 * 359.97438 * 18 17 16 20 20 N 1.36060 * 107.50748 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 22 22 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.08002 * 119.81656 * 0.02562 * 13 12 2 26 26 H 1.08007 * 120.12891 * 180.27723 * 14 13 12 27 27 H 1.08001 * 120.38973 * 179.68956 * 15 14 13 28 28 H 1.08007 * 126.24106 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 6 2.0323 -0.7105 -1.2304 13 6 2.1646 -2.0535 -1.2209 14 6 2.6265 -2.7300 -2.3630 15 6 2.9526 -2.0246 -3.4795 16 6 2.8149 -0.6233 -3.4720 17 7 3.0417 0.3184 -4.3733 18 7 2.7542 1.4689 -3.8738 19 6 2.3321 1.3362 -2.6428 20 7 2.3550 0.0092 -2.3430 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 0.7164 1.1670 3.4843 25 1 1.9095 -2.6120 -0.3324 26 1 2.7267 -3.8053 -2.3527 27 1 3.3134 -2.5334 -4.3612 28 1 2.0221 2.1344 -1.9845 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023611.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:56 Heat of formation + Delta-G solvation = 83.242156 kcal Electronic energy + Delta-G solvation = -14183.166568 eV Core-core repulsion = 11814.057156 eV Total energy + Delta-G solvation = -2369.109412 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.46866 -39.51537 -36.39900 -34.76967 -33.05242 -31.39047 -29.65440 -27.29986 -25.35355 -24.31148 -23.96608 -21.60116 -19.31946 -18.11834 -17.83423 -17.41107 -16.88293 -16.55297 -15.52193 -15.15398 -14.70441 -14.12407 -13.46747 -13.38966 -13.10159 -12.95456 -12.74391 -12.62879 -12.38462 -12.14186 -12.06183 -11.84202 -11.49815 -11.06484 -10.56532 -10.44034 -8.88678 -8.17544 -6.32037 -0.15862 0.23362 1.43731 1.44579 1.50822 1.58339 1.72152 2.41115 2.49752 3.14188 3.22091 3.66157 3.73190 3.92410 4.07998 4.21558 4.68643 4.72834 4.83355 4.91738 4.99907 5.13100 5.25277 5.27114 5.39871 5.60860 5.73859 5.84908 6.02211 6.22076 6.74659 7.37837 7.47475 8.88551 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040610 B = 0.009187 C = 0.008174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.325300 B = 3047.156492 C = 3424.686999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.079 3.921 3 H 0.016 0.984 4 C -0.529 4.529 5 H 0.076 0.924 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.959 3.041 9 H -0.259 1.259 10 H -0.289 1.289 11 H -0.281 1.281 12 C 0.115 3.885 13 C -0.146 4.146 14 C -0.049 4.049 15 C -0.122 4.122 16 C 0.184 3.816 17 N -0.344 5.344 18 N -0.286 5.286 19 C 0.110 3.890 20 N -0.389 5.389 21 H 0.070 0.930 22 H 0.019 0.981 23 H 0.043 0.957 24 H 0.264 0.736 25 H 0.167 0.833 26 H 0.192 0.808 27 H 0.181 0.819 28 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -7.890 -4.339 9.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 H 0.034 0.966 4 C -0.567 4.567 5 H 0.094 0.906 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.183 1.183 10 H -0.215 1.215 11 H -0.206 1.206 12 C 0.011 3.989 13 C -0.167 4.167 14 C -0.073 4.073 15 C -0.143 4.143 16 C -0.065 4.065 17 N -0.191 5.191 18 N -0.124 5.124 19 C -0.174 4.174 20 N -0.068 5.068 21 H 0.089 0.911 22 H 0.038 0.962 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.185 0.815 26 H 0.209 0.791 27 H 0.199 0.801 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.454 -6.916 -5.606 9.021 hybrid contribution -0.241 -0.145 2.167 2.185 sum 1.213 -7.061 -3.439 7.947 Atomic orbital electron populations 1.21641 0.95868 1.00288 1.00151 1.17853 0.93851 0.94666 0.87676 0.96643 1.21447 1.32092 1.13243 0.89871 0.90594 1.25692 0.94910 0.95472 1.01933 1.69995 1.37093 1.23775 1.24412 0.85479 0.78130 0.78770 0.79171 1.18309 1.21493 1.20644 1.21295 0.97488 0.93469 0.86649 1.21198 1.02572 0.91484 1.01429 1.21726 0.92903 1.02826 0.89878 1.20583 1.05207 0.86072 1.02447 1.23064 1.01638 0.97684 0.84148 1.74739 1.25442 0.94279 1.24603 1.74014 1.13736 1.18028 1.06669 1.26667 1.08622 0.85378 0.96689 1.44041 1.41902 1.08366 1.12480 0.91104 0.96193 0.93806 0.92693 0.81531 0.79101 0.80139 0.74858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.95 71.98 0.64 -4.60 15 2 C 0.08 3.51 2.39 -12.29 -0.03 3.48 15 3 H 0.02 0.77 7.39 -2.39 -0.02 0.75 15 4 C -0.53 -25.00 7.86 25.60 0.20 -24.80 15 5 H 0.08 3.39 6.31 -2.91 -0.02 3.37 15 6 C 0.02 0.98 5.31 84.66 0.45 1.43 15 7 N -0.91 -47.79 11.33 21.45 0.24 -47.55 15 8 Si 0.96 39.04 29.54 68.60 2.03 41.06 15 9 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 10 H -0.29 -11.98 7.11 99.48 0.71 -11.27 15 11 H -0.28 -11.31 7.11 99.48 0.71 -10.60 15 12 C 0.11 4.43 5.80 41.09 0.24 4.67 15 13 C -0.15 -4.62 8.79 22.08 0.19 -4.43 15 14 C -0.05 -1.17 10.07 22.32 0.22 -0.94 15 15 C -0.12 -3.31 10.11 22.38 0.23 -3.09 15 16 C 0.18 6.79 7.92 134.06 1.06 7.85 15 17 N -0.34 -14.16 12.31 -55.40 -0.68 -14.84 15 18 N -0.29 -11.87 12.19 -59.48 -0.72 -12.60 15 19 C 0.11 4.28 12.31 179.85 2.21 6.49 15 20 N -0.39 -15.19 2.95 -343.03 -1.01 -16.20 15 21 H 0.07 3.42 6.08 -2.39 -0.01 3.41 15 22 H 0.02 0.78 8.14 -2.39 -0.02 0.76 15 23 H 0.04 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.26 13.22 8.31 -92.70 -0.77 12.45 15 25 H 0.17 5.07 6.62 -2.91 -0.02 5.06 15 26 H 0.19 2.60 8.06 -2.91 -0.02 2.58 15 27 H 0.18 3.60 8.06 -2.91 -0.02 3.58 15 28 H 0.24 7.93 7.75 -2.91 -0.02 7.90 15 Total: -1.00 -60.06 244.00 6.45 -53.61 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 1.17 Total: 10.46 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 5.42 Total: -13.95 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -2.18 Total: -91.19 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.06 kcal Total: -60.06 6.45 -53.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023611.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.854 kcal (2) G-P(sol) polarization free energy of solvation -60.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds