Wall clock time and date at job start Mon Mar 30 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 C 1.34952 * 119.74691 * 84.72240 * 11 10 9 13 13 C 1.40545 * 120.36464 * 179.73892 * 12 11 10 14 14 C 1.36020 * 119.74757 * 0.53783 * 13 12 11 15 15 C 1.40812 * 119.22665 * 359.73683 * 14 13 12 16 16 N 1.32304 * 133.46733 * 180.02562 * 15 14 13 17 17 N 1.28685 * 109.48120 * 179.97438 * 16 15 14 18 18 C 1.30796 * 110.29482 * 0.02562 * 17 16 15 19 19 N 1.36071 * 107.50359 * 359.97438 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 24 24 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 25 25 H 1.08011 * 119.81731 * 0.02562 * 12 11 10 26 26 H 1.08006 * 120.12650 * 180.30321 * 13 12 11 27 27 H 1.08001 * 120.38580 * 179.71997 * 14 13 12 28 28 H 1.08005 * 126.24970 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 6 1.0632 -5.4884 -1.1845 13 6 0.3641 -6.7074 -1.2050 14 6 0.1091 -7.3589 -0.0385 15 6 0.5575 -6.7997 1.1735 16 7 0.4704 -7.1789 2.4381 17 7 1.0506 -6.3088 3.1879 18 6 1.5361 -5.3355 2.4614 19 7 1.2427 -5.6096 1.1613 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.8718 -3.6005 -0.9002 24 1 2.8717 -3.6084 0.8798 25 1 1.2627 -4.9680 -2.1097 26 1 0.0272 -7.1234 -2.1431 27 1 -0.4312 -8.2941 -0.0419 28 1 2.0726 -4.4722 2.8267 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261026446.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:36 Heat of formation + Delta-G solvation = 91.163219 kcal Electronic energy + Delta-G solvation = -13772.286592 eV Core-core repulsion = 11403.520663 eV Total energy + Delta-G solvation = -2368.765929 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.25278 -38.25421 -34.68961 -33.35581 -31.90643 -30.20995 -28.70331 -25.64441 -23.61587 -23.16227 -22.12623 -20.36759 -18.05700 -16.92207 -16.39040 -16.11225 -15.74770 -14.62572 -14.47572 -13.87052 -13.34660 -12.78067 -12.41259 -12.20382 -11.82551 -11.49811 -11.23903 -11.09097 -10.99105 -10.70969 -10.38784 -10.23523 -9.86693 -9.38159 -9.23561 -8.55015 -7.75156 -6.18511 -4.23995 0.85818 1.35422 2.59939 3.00291 3.20660 3.29113 3.31774 3.53584 4.27171 4.33617 4.67997 4.84320 5.00557 5.09855 5.14037 5.18036 5.70652 5.80134 5.87595 6.11396 6.15113 6.24121 6.30113 6.48963 6.65649 7.13941 7.38300 7.45102 7.76799 8.13337 8.76496 8.82071 9.42170 10.92303 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.043155 B = 0.007119 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.674745 B = 3932.113921 C = 4273.512023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.083 4.083 11 C 0.132 3.868 12 C -0.161 4.161 13 C -0.070 4.070 14 C -0.110 4.110 15 C 0.195 3.805 16 N -0.307 5.307 17 N -0.262 5.262 18 C 0.126 3.874 19 N -0.385 5.385 20 H 0.263 0.737 21 H 0.017 0.983 22 H 0.024 0.976 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.154 0.846 26 H 0.144 0.856 27 H 0.151 0.849 28 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -9.887 -3.585 10.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.121 4.121 11 C 0.028 3.972 12 C -0.182 4.182 13 C -0.095 4.095 14 C -0.131 4.131 15 C -0.054 4.054 16 N -0.153 5.153 17 N -0.101 5.101 18 C -0.157 4.157 19 N -0.064 5.064 20 H 0.073 0.927 21 H 0.036 0.964 22 H 0.043 0.957 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.172 0.828 26 H 0.161 0.839 27 H 0.168 0.832 28 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.197 -10.589 -2.143 11.025 hybrid contribution 0.649 1.846 -1.081 2.236 sum 2.846 -8.743 -3.225 9.744 Atomic orbital electron populations 1.69970 1.06160 1.26950 1.49799 1.25022 0.94855 0.99472 0.94836 0.86482 0.80051 0.83408 0.77763 1.19602 1.20861 1.20866 1.21151 0.93115 0.90436 1.52012 0.92220 1.19133 0.93377 0.90150 0.98066 1.21151 0.98751 0.88807 1.03377 1.21024 0.97953 0.95324 0.82890 1.20734 1.02666 0.97444 0.97380 1.21177 0.95924 0.94088 0.98284 1.20102 1.03448 1.01960 0.87624 1.22413 0.99288 0.86927 0.96785 1.74877 1.21383 1.22045 0.97026 1.74140 1.09559 1.00037 1.26328 1.26466 1.07339 1.03624 0.78242 1.43887 1.36991 1.17840 1.07729 0.92737 0.96429 0.95737 0.89371 0.91229 0.82797 0.83872 0.83163 0.75875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 13.29 55.43 0.74 -24.80 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 15 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.53 -13.71 9.11 -34.44 -0.31 -14.03 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 15 9 C 0.03 0.70 4.96 -27.88 -0.14 0.56 15 10 C -0.08 -1.47 5.18 -27.89 -0.14 -1.61 15 11 C 0.13 2.17 6.04 -81.74 -0.49 1.68 15 12 C -0.16 -2.22 9.61 -39.88 -0.38 -2.60 15 13 C -0.07 -0.82 10.07 -39.51 -0.40 -1.22 15 14 C -0.11 -1.48 10.11 -39.41 -0.40 -1.88 15 15 C 0.20 3.39 7.92 -156.07 -1.24 2.15 15 16 N -0.31 -5.94 12.31 31.14 0.38 -5.56 15 17 N -0.26 -5.04 12.19 29.85 0.36 -4.67 15 18 C 0.13 2.19 12.31 -89.18 -1.10 1.09 15 19 N -0.38 -6.72 2.95 -59.78 -0.18 -6.89 15 20 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 22 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.09 1.43 8.11 -51.93 -0.42 1.00 15 24 H 0.07 1.18 7.38 -51.93 -0.38 0.80 15 25 H 0.15 1.82 8.06 -52.48 -0.42 1.39 15 26 H 0.14 1.13 8.06 -52.48 -0.42 0.71 15 27 H 0.15 1.59 8.06 -52.49 -0.42 1.17 15 28 H 0.22 3.21 7.75 -52.48 -0.41 2.81 15 LS Contribution 252.10 15.07 3.80 3.80 Total: -1.00 -31.28 252.10 -7.48 -38.76 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -2.87 Total: -1.78 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -4.70 Total: -14.31 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 1.31 Total: -41.93 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.28 -7.48 -38.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026446.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.925 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds