Wall clock time and date at job start Mon Mar 30 2020 02:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 C 1.34952 * 119.74691 * 84.72240 * 11 10 9 13 13 C 1.40545 * 120.36464 * 179.73892 * 12 11 10 14 14 C 1.36020 * 119.74757 * 0.53783 * 13 12 11 15 15 C 1.40812 * 119.22665 * 359.73683 * 14 13 12 16 16 N 1.32304 * 133.46733 * 180.02562 * 15 14 13 17 17 N 1.28685 * 109.48120 * 179.97438 * 16 15 14 18 18 C 1.30796 * 110.29482 * 0.02562 * 17 16 15 19 19 N 1.36071 * 107.50359 * 359.97438 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 24 24 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 25 25 H 1.08011 * 119.81731 * 0.02562 * 12 11 10 26 26 H 1.08006 * 120.12650 * 180.30321 * 13 12 11 27 27 H 1.08001 * 120.38580 * 179.71997 * 14 13 12 28 28 H 1.08005 * 126.24970 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 6 1.0632 -5.4884 -1.1845 13 6 0.3641 -6.7074 -1.2050 14 6 0.1091 -7.3589 -0.0385 15 6 0.5575 -6.7997 1.1735 16 7 0.4704 -7.1789 2.4381 17 7 1.0506 -6.3088 3.1879 18 6 1.5361 -5.3355 2.4614 19 7 1.2427 -5.6096 1.1613 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.8718 -3.6005 -0.9002 24 1 2.8717 -3.6084 0.8798 25 1 1.2627 -4.9680 -2.1097 26 1 0.0272 -7.1234 -2.1431 27 1 -0.4312 -8.2941 -0.0419 28 1 2.0726 -4.4722 2.8267 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026446.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:36 Heat of formation + Delta-G solvation = 74.183261 kcal Electronic energy + Delta-G solvation = -13773.022899 eV Core-core repulsion = 11403.520663 eV Total energy + Delta-G solvation = -2369.502235 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.53242 -39.48785 -36.17009 -34.92252 -33.49252 -31.60842 -30.10155 -27.30970 -24.94939 -24.38341 -23.74757 -21.81564 -19.26659 -18.64483 -17.81561 -17.49277 -16.84323 -16.52410 -15.63716 -15.25727 -14.92350 -14.42907 -13.81342 -13.45221 -13.27628 -13.03454 -12.83491 -12.62209 -12.35657 -12.20939 -11.94405 -11.75839 -11.60810 -11.26650 -10.60581 -10.52926 -8.98808 -8.23057 -6.34939 -0.28155 0.16250 1.36768 1.40997 1.43247 1.54640 1.67127 2.36956 2.41768 3.11790 3.12109 3.49975 3.64026 3.86201 3.89724 4.12306 4.44999 4.60972 4.65124 4.74541 4.90716 5.04931 5.12178 5.18054 5.43581 5.45878 5.60507 5.76922 5.94542 6.14377 6.82087 7.35947 7.43257 8.88414 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.043155 B = 0.007119 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.674745 B = 3932.113921 C = 4273.512023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.285 1.285 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.037 3.963 10 C -0.067 4.067 11 C 0.096 3.904 12 C -0.143 4.143 13 C -0.051 4.051 14 C -0.116 4.116 15 C 0.184 3.816 16 N -0.344 5.344 17 N -0.289 5.289 18 C 0.116 3.884 19 N -0.390 5.390 20 H 0.263 0.737 21 H -0.019 1.019 22 H 0.005 0.995 23 H 0.108 0.892 24 H 0.072 0.928 25 H 0.179 0.821 26 H 0.195 0.805 27 H 0.181 0.819 28 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 -10.377 -5.581 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.577 4.577 8 H 0.088 0.912 9 C 0.000 4.000 10 C -0.104 4.104 11 C -0.008 4.008 12 C -0.164 4.164 13 C -0.075 4.075 14 C -0.137 4.137 15 C -0.066 4.066 16 N -0.190 5.190 17 N -0.127 5.127 18 C -0.168 4.168 19 N -0.069 5.069 20 H 0.072 0.928 21 H 0.000 1.000 22 H 0.024 0.976 23 H 0.126 0.874 24 H 0.091 0.909 25 H 0.196 0.804 26 H 0.212 0.788 27 H 0.198 0.802 28 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.033 -11.094 -4.139 12.223 hybrid contribution 0.357 1.944 -0.560 2.055 sum 3.390 -9.149 -4.700 10.830 Atomic orbital electron populations 1.70104 1.07923 1.27779 1.51531 1.25929 0.95594 1.03329 0.94667 0.85427 0.79358 0.78932 0.77509 1.18099 1.20515 1.21084 1.21651 0.93856 0.91581 1.50621 0.91187 1.18932 0.93789 0.91985 0.95324 1.20827 0.97505 0.87572 1.04543 1.21000 1.00512 0.95741 0.83512 1.21284 1.00201 0.97732 0.97180 1.21714 0.93649 0.92498 0.99668 1.20651 1.03334 1.03145 0.86554 1.23069 0.99085 0.86990 0.97431 1.74763 1.23046 1.22998 0.98187 1.74032 1.10555 1.00835 1.27286 1.26816 1.07514 1.03861 0.78623 1.43969 1.37020 1.18063 1.07874 0.92815 1.00033 0.97640 0.87376 0.90928 0.80398 0.78823 0.80221 0.74218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.40 13.29 21.45 0.28 -54.11 15 2 C 0.00 0.16 5.46 84.66 0.46 0.62 15 3 Si 0.96 41.77 29.54 68.60 2.03 43.79 15 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 15 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 7 C -0.54 -27.79 9.11 25.60 0.23 -27.55 15 8 H 0.07 3.38 7.74 -2.91 -0.02 3.36 15 9 C 0.04 1.74 4.96 29.85 0.15 1.89 15 10 C -0.07 -2.29 5.18 29.85 0.15 -2.14 15 11 C 0.10 3.02 6.04 41.10 0.25 3.26 15 12 C -0.14 -3.45 9.61 22.08 0.21 -3.24 15 13 C -0.05 -0.97 10.07 22.32 0.22 -0.75 15 14 C -0.12 -2.76 10.11 22.38 0.23 -2.54 15 15 C 0.18 6.23 7.92 134.07 1.06 7.29 15 16 N -0.34 -13.48 12.31 -55.40 -0.68 -14.16 15 17 N -0.29 -11.44 12.19 -59.48 -0.72 -12.16 15 18 C 0.12 4.11 12.31 179.85 2.21 6.32 15 19 N -0.39 -13.47 2.95 -343.05 -1.01 -14.49 15 20 H 0.26 14.50 8.31 -92.70 -0.77 13.73 15 21 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 15 22 H 0.01 0.26 8.14 -2.39 -0.02 0.24 15 23 H 0.11 3.24 8.11 -2.38 -0.02 3.22 15 24 H 0.07 2.42 7.38 -2.39 -0.02 2.40 15 25 H 0.18 3.42 8.06 -2.91 -0.02 3.40 15 26 H 0.19 1.77 8.06 -2.91 -0.02 1.75 15 27 H 0.18 3.13 8.06 -2.91 -0.02 3.11 15 28 H 0.24 7.15 7.75 -2.91 -0.02 7.13 15 Total: -1.00 -69.47 252.10 6.24 -63.23 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 1.16 Total: 4.72 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 5.18 Total: -16.82 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -2.13 Total: -94.92 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -69.47 6.24 -63.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026446.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.412 kcal (2) G-P(sol) polarization free energy of solvation -69.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds