Wall clock time and date at job start Mon Mar 30 2020 03:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46919 * 2 1 4 4 C 1.50697 * 109.47331 * 239.99632 * 2 1 3 5 5 H 1.07996 * 120.00285 * 239.99917 * 4 2 1 6 6 C 1.37876 * 119.99795 * 59.99875 * 4 2 1 7 7 N 1.31519 * 120.00121 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99952 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47096 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46944 * 120.00045 * 8 6 4 11 11 H 1.48498 * 109.46921 * 239.99827 * 8 6 4 12 12 C 1.50700 * 109.47185 * 119.99445 * 2 1 3 13 13 C 1.38664 * 126.17371 * 59.97731 * 12 2 1 14 14 N 1.31413 * 108.98941 * 180.02562 * 13 12 2 15 15 N 1.39935 * 108.83859 * 0.02562 * 14 13 12 16 16 C 1.36519 * 132.57035 * 180.02562 * 15 14 13 17 17 C 1.35526 * 119.12477 * 179.97438 * 16 15 14 18 18 C 1.40241 * 119.44974 * 0.26065 * 17 16 15 19 19 N 1.31218 * 120.28500 * 359.48010 * 18 17 16 20 20 C 1.33976 * 120.80872 * 0.50720 * 19 18 17 21 21 H 1.09000 * 109.47372 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46957 * 300.00104 * 1 2 3 23 23 H 1.08998 * 109.47211 * 60.00052 * 1 2 3 24 24 H 0.97002 * 119.99951 * 180.02562 * 7 6 4 25 25 H 1.08002 * 125.50601 * 0.05763 * 13 12 2 26 26 H 1.08004 * 120.43912 * 359.93555 * 16 15 14 27 27 H 1.08002 * 120.27148 * 179.97438 * 17 16 15 28 28 H 1.08003 * 119.85846 * 179.74720 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1454 -2.2878 -3.6036 10 1 1.1660 -1.5869 -4.8159 11 1 3.1465 -0.1876 -4.8164 12 6 2.0323 -0.7103 1.2305 13 6 1.7771 -2.0287 1.5760 14 7 2.3783 -2.2968 2.7134 15 7 3.0508 -1.1500 3.1503 16 6 3.8162 -0.8911 4.2507 17 6 4.3493 0.3450 4.4074 18 6 4.0999 1.3309 3.4417 19 7 3.3650 1.0562 2.3899 20 6 2.8330 -0.1621 2.2239 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7089 1.1612 -3.4844 25 1 1.1810 -2.7233 1.0027 26 1 3.9939 -1.6610 4.9870 27 1 4.9573 0.5702 5.2711 28 1 4.5181 2.3194 3.5621 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261027145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:58 Heat of formation + Delta-G solvation = 114.193536 kcal Electronic energy + Delta-G solvation = -14003.137733 eV Core-core repulsion = 11635.370473 eV Total energy + Delta-G solvation = -2367.767260 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.71801 -37.61076 -34.65455 -33.08589 -30.79141 -30.45931 -27.37604 -25.03116 -24.32989 -22.74227 -21.80428 -19.43767 -17.46830 -16.87765 -16.08240 -15.57929 -15.35640 -14.57556 -13.90667 -13.21668 -12.83364 -12.74743 -12.40777 -12.13869 -11.42297 -11.12952 -10.93869 -10.80698 -10.51325 -10.18947 -10.00067 -9.51124 -9.36963 -9.00331 -8.85404 -8.28243 -7.01176 -5.91917 -3.98288 0.98351 1.32234 2.58444 3.24397 3.33964 3.41797 3.46349 3.96353 4.37648 4.48961 4.55654 4.75770 5.15954 5.38522 5.52238 5.70242 5.86071 6.14032 6.38910 6.61858 6.91368 6.97058 7.03103 7.29726 7.42269 7.78208 7.94771 8.09916 8.17988 8.21398 8.50141 9.03960 9.65441 11.13458 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.041121 B = 0.008364 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.747296 B = 3346.741265 C = 3463.676379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.109 3.891 3 H 0.043 0.957 4 C -0.503 4.503 5 H 0.054 0.946 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.891 3.109 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.285 1.285 12 C -0.143 4.143 13 C 0.088 3.912 14 N -0.325 5.325 15 N -0.325 5.325 16 C 0.155 3.845 17 C -0.238 4.238 18 C 0.147 3.853 19 N -0.434 5.434 20 C 0.216 3.784 21 H 0.026 0.974 22 H 0.006 0.994 23 H 0.086 0.914 24 H 0.259 0.741 25 H 0.195 0.805 26 H 0.167 0.833 27 H 0.156 0.844 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.781 -1.056 12.281 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.090 3.910 3 H 0.061 0.939 4 C -0.542 4.542 5 H 0.073 0.927 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.155 4.155 13 C -0.089 4.089 14 N -0.150 5.150 15 N -0.098 5.098 16 C 0.020 3.980 17 C -0.263 4.263 18 C -0.041 4.041 19 N -0.144 5.144 20 C -0.008 4.008 21 H 0.045 0.955 22 H 0.025 0.975 23 H 0.104 0.896 24 H 0.069 0.931 25 H 0.211 0.789 26 H 0.185 0.815 27 H 0.174 0.826 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.542 -1.450 12.166 13.067 hybrid contribution 0.491 -0.470 -0.720 0.990 sum 5.034 -1.919 11.446 12.651 Atomic orbital electron populations 1.21769 0.97833 0.98985 1.00124 1.17259 0.92089 0.95470 0.86208 0.93911 1.21152 1.30826 1.12207 0.89977 0.92739 1.24936 0.95172 0.95020 0.98788 1.69904 1.36904 1.22895 1.23146 0.86554 0.78614 0.79705 0.83236 1.19879 1.21044 1.21096 1.20770 1.02180 0.93938 0.98564 1.23760 0.96628 0.96397 0.92082 1.77696 1.17436 1.02887 1.17027 1.47011 1.34655 1.11513 1.16626 1.21779 0.89951 0.98089 0.88144 1.21613 1.07246 0.93207 1.04189 1.23190 0.92864 0.99634 0.88377 1.68144 1.08865 1.16220 1.21134 1.20516 1.02084 0.85305 0.92872 0.95506 0.97532 0.89561 0.93087 0.78876 0.81524 0.82599 0.81284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.86 37.16 0.33 -2.88 15 2 C 0.11 2.87 2.67 -92.93 -0.25 2.62 15 3 H 0.04 1.24 8.12 -51.93 -0.42 0.82 15 4 C -0.50 -14.05 8.41 -34.44 -0.29 -14.34 15 5 H 0.05 1.52 7.73 -52.49 -0.41 1.12 15 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -25.66 11.32 55.43 0.63 -25.03 15 8 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 15 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 12 C -0.14 -3.34 4.83 -104.23 -0.50 -3.85 15 13 C 0.09 1.83 11.43 -17.57 -0.20 1.63 15 14 N -0.33 -6.49 12.66 30.47 0.39 -6.10 15 15 N -0.32 -6.13 3.90 -12.20 -0.05 -6.18 15 16 C 0.16 2.10 11.30 -16.43 -0.19 1.91 15 17 C -0.24 -2.66 10.05 -39.80 -0.40 -3.06 15 18 C 0.15 2.04 11.27 -17.06 -0.19 1.84 15 19 N -0.43 -8.61 10.48 -12.21 -0.13 -8.74 15 20 C 0.22 4.67 7.84 -155.51 -1.22 3.45 15 21 H 0.03 0.61 8.02 -51.93 -0.42 0.19 15 22 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 15 23 H 0.09 2.32 6.07 -51.93 -0.32 2.01 15 24 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 25 H 0.19 3.58 8.06 -52.49 -0.42 3.16 15 26 H 0.17 1.60 8.06 -52.48 -0.42 1.18 15 27 H 0.16 1.01 8.06 -52.49 -0.42 0.59 15 28 H 0.17 1.63 8.06 -52.48 -0.42 1.21 15 LS Contribution 249.82 15.07 3.76 3.76 Total: -1.00 -32.85 249.82 -6.23 -39.08 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -2.81 Total: -2.27 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -3.01 Total: -11.04 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.84 Total: -46.05 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.85 -6.23 -39.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.272 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds