Wall clock time and date at job start Mon Mar 30 2020 03:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46919 * 2 1 4 4 C 1.50697 * 109.47331 * 239.99632 * 2 1 3 5 5 H 1.07996 * 120.00285 * 239.99917 * 4 2 1 6 6 C 1.37876 * 119.99795 * 59.99875 * 4 2 1 7 7 N 1.31519 * 120.00121 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99952 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47096 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46944 * 120.00045 * 8 6 4 11 11 H 1.48498 * 109.46921 * 239.99827 * 8 6 4 12 12 C 1.50700 * 109.47185 * 119.99445 * 2 1 3 13 13 C 1.38664 * 126.17371 * 59.97731 * 12 2 1 14 14 N 1.31413 * 108.98941 * 180.02562 * 13 12 2 15 15 N 1.39935 * 108.83859 * 0.02562 * 14 13 12 16 16 C 1.36519 * 132.57035 * 180.02562 * 15 14 13 17 17 C 1.35526 * 119.12477 * 179.97438 * 16 15 14 18 18 C 1.40241 * 119.44974 * 0.26065 * 17 16 15 19 19 N 1.31218 * 120.28500 * 359.48010 * 18 17 16 20 20 C 1.33976 * 120.80872 * 0.50720 * 19 18 17 21 21 H 1.09000 * 109.47372 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46957 * 300.00104 * 1 2 3 23 23 H 1.08998 * 109.47211 * 60.00052 * 1 2 3 24 24 H 0.97002 * 119.99951 * 180.02562 * 7 6 4 25 25 H 1.08002 * 125.50601 * 0.05763 * 13 12 2 26 26 H 1.08004 * 120.43912 * 359.93555 * 16 15 14 27 27 H 1.08002 * 120.27148 * 179.97438 * 17 16 15 28 28 H 1.08003 * 119.85846 * 179.74720 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1454 -2.2878 -3.6036 10 1 1.1660 -1.5869 -4.8159 11 1 3.1465 -0.1876 -4.8164 12 6 2.0323 -0.7103 1.2305 13 6 1.7771 -2.0287 1.5760 14 7 2.3783 -2.2968 2.7134 15 7 3.0508 -1.1500 3.1503 16 6 3.8162 -0.8911 4.2507 17 6 4.3493 0.3450 4.4074 18 6 4.0999 1.3309 3.4417 19 7 3.3650 1.0562 2.3899 20 6 2.8330 -0.1621 2.2239 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7089 1.1612 -3.4844 25 1 1.1810 -2.7233 1.0027 26 1 3.9939 -1.6610 4.9870 27 1 4.9573 0.5702 5.2711 28 1 4.5181 2.3194 3.5621 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261027145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:58 Heat of formation + Delta-G solvation = 92.617490 kcal Electronic energy + Delta-G solvation = -14004.073341 eV Core-core repulsion = 11635.370473 eV Total energy + Delta-G solvation = -2368.702867 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.10900 -38.94984 -36.46443 -34.63955 -32.64320 -31.80944 -28.96237 -27.15879 -25.56049 -24.20130 -23.47614 -21.06904 -18.90349 -18.36803 -17.81511 -16.89218 -16.81791 -16.42147 -15.10418 -14.90742 -14.60638 -14.34708 -13.69896 -13.51881 -13.36052 -12.95914 -12.82407 -12.50568 -12.27808 -12.04962 -11.85351 -11.38937 -10.91983 -10.64164 -10.41617 -10.32684 -8.55134 -8.02161 -6.17966 -0.17978 0.02831 1.30371 1.42357 1.43400 1.55428 1.77177 2.46182 2.64087 3.16274 3.22750 3.28520 3.70847 4.18794 4.32852 4.55382 4.60023 4.76864 4.84911 4.98618 5.18726 5.26684 5.30444 5.59536 5.63895 5.75054 5.99062 6.12765 6.39307 6.57906 6.88199 6.91029 7.49210 9.00943 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.041121 B = 0.008364 C = 0.008082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.747296 B = 3346.741265 C = 3463.676379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.119 3.881 3 H -0.002 1.002 4 C -0.517 4.517 5 H 0.047 0.953 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.275 1.275 11 H -0.282 1.282 12 C -0.206 4.206 13 C 0.086 3.914 14 N -0.336 5.336 15 N -0.325 5.325 16 C 0.135 3.865 17 C -0.206 4.206 18 C 0.164 3.836 19 N -0.501 5.501 20 C 0.217 3.783 21 H 0.036 0.964 22 H 0.013 0.987 23 H 0.060 0.940 24 H 0.261 0.739 25 H 0.203 0.797 26 H 0.211 0.789 27 H 0.220 0.780 28 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.741 -1.280 14.553 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.065 0.935 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.201 1.201 11 H -0.208 1.208 12 C -0.219 4.219 13 C -0.090 4.090 14 N -0.162 5.162 15 N -0.098 5.098 16 C 0.002 3.998 17 C -0.230 4.230 18 C -0.020 4.020 19 N -0.213 5.213 20 C -0.009 4.009 21 H 0.055 0.945 22 H 0.032 0.968 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.220 0.780 26 H 0.227 0.773 27 H 0.237 0.763 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.522 -1.680 14.483 15.973 hybrid contribution 0.084 -0.217 -1.140 1.163 sum 6.607 -1.897 13.344 15.010 Atomic orbital electron populations 1.21590 0.97531 0.99227 0.99091 1.16898 0.92369 0.93110 0.87669 0.98418 1.21407 1.30759 1.12083 0.91265 0.93506 1.25723 0.95340 0.95730 1.01692 1.70039 1.37813 1.24106 1.23841 0.85535 0.78239 0.78554 0.79476 1.19503 1.20085 1.20803 1.20419 1.06526 0.95477 0.99461 1.23784 0.96940 0.95688 0.92583 1.77591 1.18342 1.03531 1.16770 1.47263 1.34653 1.10453 1.17445 1.22891 0.89022 1.00511 0.87370 1.22357 1.05114 0.91017 1.04464 1.24258 0.89122 1.02100 0.86493 1.68236 1.12447 1.15899 1.24715 1.20524 1.01090 0.86411 0.92860 0.94490 0.96756 0.92094 0.92956 0.78050 0.77264 0.76283 0.76877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.86 71.98 0.64 -5.44 15 2 C 0.12 6.61 2.67 -12.29 -0.03 6.58 15 3 H 0.00 -0.15 8.12 -2.39 -0.02 -0.17 15 4 C -0.52 -30.07 8.41 25.60 0.22 -29.86 15 5 H 0.05 2.72 7.73 -2.91 -0.02 2.70 15 6 C 0.01 0.76 5.30 84.65 0.45 1.21 15 7 N -0.92 -54.86 11.32 21.45 0.24 -54.62 15 8 Si 0.96 45.09 29.54 68.60 2.03 47.12 15 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 15 12 C -0.21 -10.07 4.83 -19.61 -0.09 -10.16 15 13 C 0.09 3.69 11.43 84.86 0.97 4.66 15 14 N -0.34 -13.34 12.66 -57.50 -0.73 -14.07 15 15 N -0.33 -11.84 3.90 -192.50 -0.75 -12.60 15 16 C 0.13 3.07 11.30 83.34 0.94 4.02 15 17 C -0.21 -3.42 10.05 22.13 0.22 -3.20 15 18 C 0.16 3.92 11.27 85.27 0.96 4.88 15 19 N -0.50 -19.59 10.48 -192.55 -2.02 -21.61 15 20 C 0.22 9.48 7.84 133.13 1.04 10.53 15 21 H 0.04 1.78 8.02 -2.39 -0.02 1.76 15 22 H 0.01 0.66 8.14 -2.38 -0.02 0.64 15 23 H 0.06 3.45 6.07 -2.39 -0.01 3.43 15 24 H 0.26 14.71 8.31 -92.71 -0.77 13.93 15 25 H 0.20 7.81 8.06 -2.91 -0.02 7.78 15 26 H 0.21 2.87 8.06 -2.91 -0.02 2.84 15 27 H 0.22 0.92 8.06 -2.91 -0.02 0.90 15 28 H 0.21 2.98 8.06 -2.91 -0.02 2.95 15 Total: -1.00 -76.97 249.82 5.25 -71.72 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: 1.16 Total: 0.83 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 5.31 Total: -16.78 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -3.25 Total: -102.89 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.97 5.25 -71.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261027145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.338 kcal (2) G-P(sol) polarization free energy of solvation -76.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds