Wall clock time and date at job start Mon Mar 30 2020 03:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00065 * 2 1 4 4 H 1.48500 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47189 * 299.99477 * 3 2 1 6 6 H 1.48497 * 109.47382 * 59.99715 * 3 2 1 7 7 C 1.37875 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47519 * 179.97438 * 9 7 2 11 11 C 1.38123 * 120.03544 * 265.25935 * 10 9 7 12 12 C 1.38261 * 120.07479 * 180.27346 * 11 10 9 13 13 C 1.38312 * 120.14817 * 359.73990 * 12 11 10 14 14 C 1.38078 * 120.07318 * 359.97438 * 13 12 11 15 15 C 1.38883 * 120.03894 * 84.99967 * 10 9 7 16 16 N 1.39675 * 120.07456 * 0.02562 * 15 10 9 17 17 C 1.46501 * 120.00179 * 179.72497 * 16 15 10 18 18 C 1.53001 * 117.51946 * 136.28469 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47992 * 18 17 16 20 20 H 0.97006 * 119.99352 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.47113 * 59.99875 * 9 7 2 22 22 H 1.08995 * 109.47230 * 300.00112 * 9 7 2 23 23 H 1.07997 * 119.96668 * 0.02562 * 11 10 9 24 24 H 1.07997 * 119.93029 * 179.76561 * 12 11 10 25 25 H 1.08003 * 119.96056 * 179.97438 * 13 12 11 26 26 H 1.08006 * 120.04050 * 180.02562 * 14 13 12 27 27 H 0.97003 * 120.00239 * 359.72274 * 16 15 10 28 28 H 1.09002 * 115.54982 * 350.58265 * 17 16 15 29 29 H 1.09001 * 117.49733 * 214.97423 * 18 17 16 30 30 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 31 31 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 32 32 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0005 11 6 2.6044 -4.2344 -1.1911 12 6 3.4984 -5.2891 -1.1916 13 6 4.0252 -5.7537 -0.0001 14 6 3.6599 -5.1649 1.1942 15 6 2.7617 -4.1050 1.1982 16 7 2.3893 -3.5078 2.4047 17 6 2.9462 -3.9986 3.6677 18 6 3.4102 -2.9570 4.6879 19 6 2.1312 -3.7579 4.9401 20 1 -0.4849 0.8402 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8902 23 1 2.1951 -3.8739 -2.1233 24 1 3.7864 -5.7509 -2.1244 25 1 4.7230 -6.5781 -0.0040 26 1 4.0719 -5.5279 2.1243 27 1 1.7619 -2.7679 2.4063 28 1 3.5143 -4.9265 3.6019 29 1 4.2836 -3.1997 5.2931 30 1 3.3016 -1.9063 4.4192 31 1 1.1808 -3.2340 4.8374 32 1 2.1632 -4.5276 5.7113 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261049606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:23 Heat of formation + Delta-G solvation = 43.795873 kcal Electronic energy + Delta-G solvation = -14082.255625 eV Core-core repulsion = 11814.976037 eV Total energy + Delta-G solvation = -2267.279588 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.01994 -37.00809 -33.57758 -32.76603 -31.05398 -28.15688 -26.71105 -23.33075 -22.58618 -22.17012 -20.30508 -19.93032 -16.96815 -16.27840 -15.83791 -15.03847 -14.55768 -14.26157 -13.60009 -13.03309 -12.89638 -12.53267 -12.22851 -11.99792 -11.40667 -11.37868 -11.19353 -10.96677 -10.77460 -10.47102 -10.23359 -10.20766 -9.49933 -9.37517 -9.11943 -8.43669 -7.89070 -6.57671 -6.03066 -4.08395 2.23147 2.35232 3.27607 3.35904 3.41597 3.92227 4.11222 4.41295 4.73116 5.01905 5.15458 5.22508 5.29186 5.60070 5.63233 5.77939 5.79251 5.95569 6.12037 6.19638 6.29916 6.38224 6.53813 6.80649 7.00845 7.17340 7.34341 7.50031 7.62522 7.82775 7.91994 8.14702 8.33796 8.45450 8.98191 9.55949 11.04283 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.010922 C = 0.007937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.176591 B = 2563.045740 C = 3526.766087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.507 4.507 8 H 0.057 0.943 9 C 0.056 3.944 10 C -0.107 4.107 11 C -0.083 4.083 12 C -0.182 4.182 13 C -0.102 4.102 14 C -0.207 4.207 15 C 0.214 3.786 16 N -0.711 5.711 17 C 0.097 3.903 18 C -0.205 4.205 19 C -0.200 4.200 20 H 0.261 0.739 21 H 0.028 0.972 22 H 0.022 0.978 23 H 0.115 0.885 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.413 0.587 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.440 -8.451 5.553 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.545 4.545 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.111 4.111 11 C -0.102 4.102 12 C -0.202 4.202 13 C -0.121 4.121 14 C -0.229 4.229 15 C 0.112 3.888 16 N -0.341 5.341 17 C -0.011 4.011 18 C -0.244 4.244 19 C -0.239 4.239 20 H 0.070 0.930 21 H 0.046 0.954 22 H 0.040 0.960 23 H 0.133 0.867 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.252 0.748 28 H 0.141 0.859 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.361 -8.406 5.673 11.471 hybrid contribution 0.245 1.340 0.069 1.364 sum 5.606 -7.066 5.742 10.692 Atomic orbital electron populations 1.69972 1.05962 1.26600 1.50829 1.25013 0.94838 0.99157 0.95355 0.86535 0.80248 0.83709 0.77580 1.19701 1.20969 1.21072 1.21148 0.93085 0.89881 1.50399 0.92508 1.18150 0.92419 0.89652 0.97860 1.20176 1.01196 0.99029 0.90702 1.20816 0.96985 0.95104 0.97332 1.20767 1.02010 1.00250 0.97167 1.20595 0.99740 0.99405 0.92373 1.20493 1.04064 1.00423 0.97933 1.17624 0.93450 0.91865 0.85865 1.44157 1.50179 1.38538 1.01177 1.21405 1.00376 0.98112 0.81233 1.23456 0.97846 0.98861 1.04228 1.23361 0.96347 1.03835 1.00308 0.92977 0.95394 0.96035 0.86692 0.87587 0.87505 0.87230 0.74830 0.85863 0.88787 0.88431 0.88635 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -14.02 9.09 -34.44 -0.31 -14.34 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.06 1.44 4.53 -29.03 -0.13 1.31 16 10 C -0.11 -2.39 5.09 -104.42 -0.53 -2.92 16 11 C -0.08 -1.70 9.68 -39.61 -0.38 -2.08 16 12 C -0.18 -3.21 10.04 -39.55 -0.40 -3.60 16 13 C -0.10 -1.71 10.04 -39.61 -0.40 -2.11 16 14 C -0.21 -3.66 9.32 -39.38 -0.37 -4.02 16 15 C 0.21 4.33 6.63 -83.79 -0.56 3.78 16 16 N -0.71 -13.44 5.64 -52.16 -0.29 -13.73 16 17 C 0.10 1.45 6.32 -67.93 -0.43 1.02 16 18 C -0.20 -2.77 10.46 -26.73 -0.28 -3.05 16 19 C -0.20 -2.58 10.46 -26.73 -0.28 -2.86 16 20 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 21 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 22 H 0.02 0.57 6.82 -51.93 -0.35 0.22 16 23 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 24 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 25 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 26 H 0.11 1.66 5.89 -52.48 -0.31 1.35 16 27 H 0.41 8.56 6.94 -40.82 -0.28 8.28 16 28 H 0.12 1.64 5.90 -51.93 -0.31 1.34 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 273.31 15.07 4.12 4.12 Total: -1.00 -29.17 273.31 -8.79 -37.96 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.17 Total: 7.83 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -4.16 Total: -27.38 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.44 Total: -39.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.17 -8.79 -37.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.761 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds