Wall clock time and date at job start Mon Mar 30 2020 03:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00065 * 2 1 4 4 H 1.48500 * 109.47146 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47189 * 299.99477 * 3 2 1 6 6 H 1.48497 * 109.47382 * 59.99715 * 3 2 1 7 7 C 1.37875 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47519 * 179.97438 * 9 7 2 11 11 C 1.38123 * 120.03544 * 265.25935 * 10 9 7 12 12 C 1.38261 * 120.07479 * 180.27346 * 11 10 9 13 13 C 1.38312 * 120.14817 * 359.73990 * 12 11 10 14 14 C 1.38078 * 120.07318 * 359.97438 * 13 12 11 15 15 C 1.38883 * 120.03894 * 84.99967 * 10 9 7 16 16 N 1.39675 * 120.07456 * 0.02562 * 15 10 9 17 17 C 1.46501 * 120.00179 * 179.72497 * 16 15 10 18 18 C 1.53001 * 117.51946 * 136.28469 * 17 16 15 19 19 C 1.52999 * 60.00190 * 107.47992 * 18 17 16 20 20 H 0.97006 * 119.99352 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.47113 * 59.99875 * 9 7 2 22 22 H 1.08995 * 109.47230 * 300.00112 * 9 7 2 23 23 H 1.07997 * 119.96668 * 0.02562 * 11 10 9 24 24 H 1.07997 * 119.93029 * 179.76561 * 12 11 10 25 25 H 1.08003 * 119.96056 * 179.97438 * 13 12 11 26 26 H 1.08006 * 120.04050 * 180.02562 * 14 13 12 27 27 H 0.97003 * 120.00239 * 359.72274 * 16 15 10 28 28 H 1.09002 * 115.54982 * 350.58265 * 17 16 15 29 29 H 1.09001 * 117.49733 * 214.97423 * 18 17 16 30 30 H 1.08995 * 117.49577 * 359.97438 * 18 17 16 31 31 H 1.09004 * 117.50150 * 252.51496 * 19 18 17 32 32 H 1.09004 * 117.49681 * 107.48417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0005 11 6 2.6044 -4.2344 -1.1911 12 6 3.4984 -5.2891 -1.1916 13 6 4.0252 -5.7537 -0.0001 14 6 3.6599 -5.1649 1.1942 15 6 2.7617 -4.1050 1.1982 16 7 2.3893 -3.5078 2.4047 17 6 2.9462 -3.9986 3.6677 18 6 3.4102 -2.9570 4.6879 19 6 2.1312 -3.7579 4.9401 20 1 -0.4849 0.8402 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8902 23 1 2.1951 -3.8739 -2.1233 24 1 3.7864 -5.7509 -2.1244 25 1 4.7230 -6.5781 -0.0040 26 1 4.0719 -5.5279 2.1243 27 1 1.7619 -2.7679 2.4063 28 1 3.5143 -4.9265 3.6019 29 1 4.2836 -3.1997 5.2931 30 1 3.3016 -1.9063 4.4192 31 1 1.1808 -3.2340 4.8374 32 1 2.1632 -4.5276 5.7113 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:22 Heat of formation + Delta-G solvation = 27.715596 kcal Electronic energy + Delta-G solvation = -14082.952919 eV Core-core repulsion = 11814.976037 eV Total energy + Delta-G solvation = -2267.976881 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.45674 -38.22319 -35.49528 -34.25577 -32.81995 -29.69202 -28.48557 -25.23020 -23.97309 -23.21882 -21.79573 -21.33455 -18.54276 -18.25505 -17.20849 -16.73187 -16.05210 -15.65732 -15.01464 -14.68443 -14.38775 -14.13745 -13.76017 -13.53431 -13.29112 -12.91827 -12.66263 -12.43551 -12.35425 -12.32630 -11.78908 -11.51695 -11.36090 -11.15363 -10.62124 -10.42247 -9.43551 -8.27336 -7.93745 -6.32460 0.74756 0.90607 1.34816 1.36588 1.49337 2.37736 2.59330 2.97232 3.09622 3.28554 3.90413 3.97864 4.14523 4.27762 4.31424 4.47237 4.70204 4.74268 4.78026 4.90376 5.02249 5.10865 5.25145 5.26499 5.31578 5.42726 5.65069 5.75442 5.84779 6.04158 6.17500 6.26449 6.75204 6.79544 6.87922 7.35922 8.88232 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.010922 C = 0.007937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.176591 B = 2563.045740 C = 3526.766087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.046 0.954 9 C 0.071 3.929 10 C -0.150 4.150 11 C -0.099 4.099 12 C -0.182 4.182 13 C -0.089 4.089 14 C -0.205 4.205 15 C 0.201 3.799 16 N -0.722 5.722 17 C 0.075 3.925 18 C -0.201 4.201 19 C -0.187 4.187 20 H 0.264 0.736 21 H -0.005 1.005 22 H 0.001 0.999 23 H 0.107 0.893 24 H 0.137 0.863 25 H 0.151 0.849 26 H 0.141 0.859 27 H 0.397 0.603 28 H 0.146 0.854 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.711 -9.792 6.561 14.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.034 3.966 10 C -0.154 4.154 11 C -0.118 4.118 12 C -0.202 4.202 13 C -0.108 4.108 14 C -0.228 4.228 15 C 0.098 3.902 16 N -0.349 5.349 17 C -0.031 4.031 18 C -0.240 4.240 19 C -0.225 4.225 20 H 0.073 0.927 21 H 0.014 0.986 22 H 0.019 0.981 23 H 0.125 0.875 24 H 0.155 0.845 25 H 0.168 0.832 26 H 0.158 0.842 27 H 0.232 0.768 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.645 -9.765 6.699 14.096 hybrid contribution -0.456 1.683 -0.231 1.759 sum 7.189 -8.082 6.469 12.604 Atomic orbital electron populations 1.70085 1.07439 1.27640 1.51653 1.25838 0.95673 1.02694 0.94890 0.85488 0.78865 0.79334 0.77917 1.19388 1.20287 1.20177 1.21325 0.92593 0.91220 1.50174 0.93570 1.17826 0.92567 0.91034 0.95168 1.19982 1.02840 0.99707 0.92904 1.20919 0.98094 0.96355 0.96392 1.21084 1.00823 0.99073 0.99238 1.21118 0.98920 0.99428 0.91294 1.20875 1.02863 0.99141 0.99883 1.17847 0.94042 0.92800 0.85492 1.44335 1.50056 1.38135 1.02423 1.21775 1.01840 0.99336 0.80154 1.23483 0.99341 0.97358 1.03799 1.23421 0.95369 1.03999 0.99714 0.92704 0.98623 0.98105 0.87493 0.84522 0.83179 0.84166 0.76768 0.83661 0.85920 0.90726 0.90168 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.96 45.05 29.54 68.60 2.03 47.07 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.51 -29.73 9.09 25.60 0.23 -29.49 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.07 3.88 4.53 29.10 0.13 4.01 16 10 C -0.15 -6.95 5.09 -19.74 -0.10 -7.05 16 11 C -0.10 -4.07 9.68 22.25 0.22 -3.86 16 12 C -0.18 -6.00 10.04 22.29 0.22 -5.78 16 13 C -0.09 -2.64 10.04 22.25 0.22 -2.41 16 14 C -0.21 -6.69 9.32 22.40 0.21 -6.48 16 15 C 0.20 8.12 6.63 38.21 0.25 8.38 16 16 N -0.72 -27.66 5.64 -318.95 -1.80 -29.46 16 17 C 0.08 2.13 6.32 44.99 0.28 2.42 16 18 C -0.20 -5.10 10.46 30.59 0.32 -4.78 16 19 C -0.19 -4.50 10.46 30.60 0.32 -4.18 16 20 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 21 H 0.00 -0.27 8.05 -2.38 -0.02 -0.29 16 22 H 0.00 0.05 6.82 -2.39 -0.02 0.03 16 23 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 24 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 25 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 26 H 0.14 3.64 5.89 -2.91 -0.02 3.62 16 27 H 0.40 17.37 6.94 -92.71 -0.64 16.73 16 28 H 0.15 3.38 5.90 -2.39 -0.01 3.36 16 29 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.13 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -65.27 273.31 3.76 -61.52 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.47 Total: 24.91 kcal Atomic # 6 Polarization: -51.12 SS G_CDS: 2.78 Total: -48.35 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -1.52 Total: -85.15 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.27 3.76 -61.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.232 kcal (2) G-P(sol) polarization free energy of solvation -65.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds