Wall clock time and date at job start Mon Mar 30 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50705 * 109.46948 * 2 1 4 4 N 1.31185 * 126.18663 * 270.00272 * 3 2 1 5 5 N 1.28618 * 110.30263 * 179.97438 * 4 3 2 6 6 C 1.33000 * 109.38316 * 359.97438 * 5 4 3 7 7 C 1.39692 * 132.67090 * 179.97438 * 6 5 4 8 8 C 1.40563 * 118.90412 * 180.02562 * 7 6 5 9 9 C 1.40519 * 120.74989 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00124 * 23.13007 * 9 8 7 11 11 C 1.39977 * 119.99747 * 203.11877 * 9 8 7 12 12 N 1.30812 * 119.99839 * 17.40676 * 11 9 8 13 13 Si 1.86795 * 119.99870 * 197.39924 * 11 9 8 14 14 H 1.48502 * 109.47515 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47379 * 120.00655 * 13 11 9 16 16 H 1.48508 * 109.47048 * 240.00377 * 13 11 9 17 17 C 1.46877 * 118.49696 * 0.02562 * 8 7 6 18 18 C 1.34164 * 119.48218 * 359.97438 * 17 8 7 19 19 N 1.36115 * 126.17944 * 89.99751 * 3 2 1 20 20 H 1.09000 * 109.46822 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46646 * 299.99257 * 1 2 3 22 22 H 1.08995 * 109.47180 * 59.99673 * 1 2 3 23 23 H 1.08993 * 109.46808 * 240.00587 * 2 1 3 24 24 H 1.08995 * 109.47180 * 120.00327 * 2 1 3 25 25 H 1.07999 * 120.55289 * 0.02883 * 7 6 5 26 26 H 0.96999 * 120.00052 * 179.97438 * 12 11 9 27 27 H 1.08006 * 120.25617 * 179.72583 * 17 8 7 28 28 H 1.08002 * 119.44884 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2905 2.1511 -1.0588 5 7 2.7023 3.3177 -0.7068 6 6 2.7285 3.3945 0.6207 7 6 3.0892 4.4157 1.5031 8 6 3.0052 4.1796 2.8862 9 6 3.3588 5.1791 3.8084 10 1 3.3368 6.2179 3.5138 11 6 3.7392 4.8284 5.1091 12 7 4.0955 3.5986 5.3771 13 14 3.7383 6.1166 6.4618 14 1 3.2976 7.4203 5.9037 15 1 2.8070 5.7004 7.5410 16 1 5.1091 6.2530 7.0164 17 6 2.5408 2.8641 3.3457 18 6 2.2103 1.9282 2.4429 19 7 2.3001 2.1785 1.0987 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.4268 5.3708 1.1289 26 1 4.3595 3.3557 6.2783 27 1 2.4697 2.6505 4.4020 28 1 1.8692 0.9610 2.7814 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261074940.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:08 Heat of formation + Delta-G solvation = 75.553890 kcal Electronic energy + Delta-G solvation = -13926.155249 eV Core-core repulsion = 11556.712448 eV Total energy + Delta-G solvation = -2369.442800 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.92818 -36.74641 -34.34990 -33.73913 -31.48996 -29.59075 -28.32675 -25.89324 -23.49789 -22.35026 -21.54204 -19.95550 -17.89706 -16.66965 -15.60435 -15.35310 -15.12192 -14.24251 -14.11313 -13.62796 -13.20886 -12.39429 -12.29415 -11.68623 -11.56596 -11.44420 -11.31342 -11.13820 -10.90400 -10.61222 -10.55253 -10.05901 -9.92116 -9.22970 -9.19194 -8.22677 -7.38729 -6.95615 -4.80957 2.07674 2.41606 2.83908 2.86741 2.91530 3.58247 3.62767 3.80458 4.16137 5.03281 5.10998 5.27816 5.36854 5.56839 5.76907 5.95852 6.02860 6.13047 6.16142 6.39723 6.43818 6.55766 6.67783 6.95788 7.21154 7.40786 7.51853 7.63199 7.94996 8.18972 8.33829 8.44624 9.62285 9.86882 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.053263 B = 0.007759 C = 0.007053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.565855 B = 3607.929308 C = 3968.953356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.018 4.018 3 C 0.077 3.923 4 N -0.266 5.266 5 N -0.379 5.379 6 C 0.266 3.734 7 C -0.302 4.302 8 C 0.130 3.870 9 C -0.420 4.420 10 H 0.095 0.905 11 C 0.074 3.926 12 N -0.776 5.776 13 Si 0.922 3.078 14 H -0.254 1.254 15 H -0.267 1.267 16 H -0.269 1.269 17 C -0.105 4.105 18 C 0.023 3.977 19 N -0.414 5.414 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.122 0.878 26 H 0.291 0.709 27 H 0.153 0.847 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.613 -4.357 3.788 6.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.058 4.058 3 C -0.186 4.186 4 N -0.106 5.106 5 N -0.227 5.227 6 C 0.024 3.976 7 C -0.329 4.329 8 C 0.122 3.878 9 C -0.449 4.449 10 H 0.113 0.887 11 C -0.148 4.148 12 N -0.400 5.400 13 Si 0.744 3.256 14 H -0.178 1.178 15 H -0.192 1.192 16 H -0.194 1.194 17 C -0.127 4.127 18 C -0.096 4.096 19 N -0.098 5.098 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.140 0.860 26 H 0.102 0.898 27 H 0.170 0.830 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.402 -4.209 2.317 5.887 hybrid contribution 0.020 0.046 2.120 2.121 sum -3.382 -4.164 4.437 6.961 Atomic orbital electron populations 1.21752 0.94889 1.01274 1.02397 1.19625 0.95588 0.87618 1.02924 1.24080 1.14194 0.97926 0.82400 1.73856 1.12767 0.99649 1.24337 1.75018 1.28887 1.12075 1.06739 1.22036 0.97592 0.86202 0.91725 1.19750 1.24119 0.98896 0.90105 1.18590 0.87210 0.90780 0.91258 1.19634 1.35646 0.95504 0.94111 0.88715 1.26197 0.91602 0.96681 1.00357 1.69738 1.27577 1.19422 1.23231 0.86012 0.79160 0.81094 0.79287 1.17755 1.19188 1.19401 1.22460 0.97451 0.93445 0.99369 1.21086 1.07141 1.00922 0.80498 1.43280 1.47513 1.13122 1.05910 0.92295 0.92991 0.92169 0.89576 0.91261 0.85966 0.89756 0.82951 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.90 37.16 0.37 -1.62 15 2 C -0.02 -0.28 6.42 -27.88 -0.18 -0.46 15 3 C 0.08 1.68 7.38 -153.85 -1.14 0.54 15 4 N -0.27 -6.64 12.20 33.01 0.40 -6.24 15 5 N -0.38 -10.23 12.34 31.06 0.38 -9.85 15 6 C 0.27 6.95 7.86 -155.74 -1.22 5.73 15 7 C -0.30 -7.70 9.94 -38.16 -0.38 -8.08 15 8 C 0.13 3.17 5.73 -104.67 -0.60 2.57 15 9 C -0.42 -9.80 9.06 -38.07 -0.34 -10.15 15 10 H 0.09 2.13 7.90 -52.49 -0.41 1.72 15 11 C 0.07 1.57 5.20 -17.33 -0.09 1.48 15 12 N -0.78 -16.85 10.85 55.55 0.60 -16.25 15 13 Si 0.92 15.94 29.59 -169.99 -5.03 10.91 15 14 H -0.25 -4.42 7.11 56.52 0.40 -4.02 15 15 H -0.27 -4.51 7.11 56.52 0.40 -4.11 15 16 H -0.27 -4.64 7.11 56.52 0.40 -4.23 15 17 C -0.10 -2.33 8.82 -37.52 -0.33 -2.66 15 18 C 0.02 0.48 10.81 -16.66 -0.18 0.30 15 19 N -0.41 -9.68 2.96 -59.76 -0.18 -9.86 15 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.12 3.03 8.06 -52.49 -0.42 2.61 15 26 H 0.29 5.61 8.30 -40.82 -0.34 5.27 15 27 H 0.15 3.24 6.22 -52.48 -0.33 2.91 15 28 H 0.14 2.34 8.05 -52.49 -0.42 1.92 15 LS Contribution 249.62 15.07 3.76 3.76 Total: -1.00 -28.45 249.62 -6.99 -35.44 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -2.83 Total: 4.43 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -4.10 Total: -12.34 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 1.21 Total: -42.19 kcal Atomic # 14 Polarization: 15.94 SS G_CDS: -5.03 Total: 10.91 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.45 -6.99 -35.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074940.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.995 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds