Wall clock time and date at job start Mon Mar 30 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50705 * 109.46948 * 2 1 4 4 N 1.31185 * 126.18663 * 270.00272 * 3 2 1 5 5 N 1.28618 * 110.30263 * 179.97438 * 4 3 2 6 6 C 1.33000 * 109.38316 * 359.97438 * 5 4 3 7 7 C 1.39692 * 132.67090 * 179.97438 * 6 5 4 8 8 C 1.40563 * 118.90412 * 180.02562 * 7 6 5 9 9 C 1.40519 * 120.74989 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00124 * 23.13007 * 9 8 7 11 11 C 1.39977 * 119.99747 * 203.11877 * 9 8 7 12 12 N 1.30812 * 119.99839 * 17.40676 * 11 9 8 13 13 Si 1.86795 * 119.99870 * 197.39924 * 11 9 8 14 14 H 1.48502 * 109.47515 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47379 * 120.00655 * 13 11 9 16 16 H 1.48508 * 109.47048 * 240.00377 * 13 11 9 17 17 C 1.46877 * 118.49696 * 0.02562 * 8 7 6 18 18 C 1.34164 * 119.48218 * 359.97438 * 17 8 7 19 19 N 1.36115 * 126.17944 * 89.99751 * 3 2 1 20 20 H 1.09000 * 109.46822 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.46646 * 299.99257 * 1 2 3 22 22 H 1.08995 * 109.47180 * 59.99673 * 1 2 3 23 23 H 1.08993 * 109.46808 * 240.00587 * 2 1 3 24 24 H 1.08995 * 109.47180 * 120.00327 * 2 1 3 25 25 H 1.07999 * 120.55289 * 0.02883 * 7 6 5 26 26 H 0.96999 * 120.00052 * 179.97438 * 12 11 9 27 27 H 1.08006 * 120.25617 * 179.72583 * 17 8 7 28 28 H 1.08002 * 119.44884 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2905 2.1511 -1.0588 5 7 2.7023 3.3177 -0.7068 6 6 2.7285 3.3945 0.6207 7 6 3.0892 4.4157 1.5031 8 6 3.0052 4.1796 2.8862 9 6 3.3588 5.1791 3.8084 10 1 3.3368 6.2179 3.5138 11 6 3.7392 4.8284 5.1091 12 7 4.0955 3.5986 5.3771 13 14 3.7383 6.1166 6.4618 14 1 3.2976 7.4203 5.9037 15 1 2.8070 5.7004 7.5410 16 1 5.1091 6.2530 7.0164 17 6 2.5408 2.8641 3.3457 18 6 2.2103 1.9282 2.4429 19 7 2.3001 2.1785 1.0987 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 3.4268 5.3708 1.1289 26 1 4.3595 3.3557 6.2783 27 1 2.4697 2.6505 4.4020 28 1 1.8692 0.9610 2.7814 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261074940.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:08 Heat of formation + Delta-G solvation = 60.398831 kcal Electronic energy + Delta-G solvation = -13926.812421 eV Core-core repulsion = 11556.712448 eV Total energy + Delta-G solvation = -2370.099973 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.72737 -38.51310 -36.08702 -35.19271 -33.15090 -31.34645 -30.03076 -27.65534 -24.89288 -24.10092 -23.34073 -21.58167 -19.66437 -18.41546 -17.23198 -17.08764 -16.88902 -15.78346 -15.56014 -15.09313 -14.70648 -13.94884 -13.68850 -13.25628 -13.14836 -12.98786 -12.90462 -12.69106 -12.30005 -12.15339 -12.03603 -11.73754 -11.60629 -11.04373 -10.93356 -10.03012 -9.08164 -8.73022 -6.65442 0.33110 0.68569 1.41206 1.46905 1.58231 1.91017 2.07038 2.14880 2.38675 3.28278 3.56749 3.78549 4.05569 4.28198 4.33798 4.39140 4.54701 4.64530 4.78642 4.98035 4.98314 5.09206 5.23091 5.32456 5.48412 5.57888 5.68997 5.84191 6.15858 6.41805 6.55571 6.67442 7.98063 8.02896 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.053263 B = 0.007759 C = 0.007053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.565855 B = 3607.929308 C = 3968.953356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.020 4.020 3 C 0.100 3.900 4 N -0.306 5.306 5 N -0.426 5.426 6 C 0.248 3.752 7 C -0.348 4.348 8 C 0.113 3.887 9 C -0.436 4.436 10 H 0.091 0.909 11 C 0.044 3.956 12 N -0.786 5.786 13 Si 0.995 3.005 14 H -0.260 1.260 15 H -0.252 1.252 16 H -0.263 1.263 17 C -0.120 4.120 18 C 0.035 3.965 19 N -0.426 5.426 20 H 0.099 0.901 21 H 0.045 0.955 22 H 0.043 0.957 23 H 0.101 0.899 24 H 0.098 0.902 25 H 0.106 0.894 26 H 0.307 0.693 27 H 0.165 0.835 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.216 -6.117 6.328 9.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.059 4.059 3 C -0.165 4.165 4 N -0.143 5.143 5 N -0.273 5.273 6 C 0.005 3.995 7 C -0.375 4.375 8 C 0.105 3.895 9 C -0.464 4.464 10 H 0.110 0.890 11 C -0.177 4.177 12 N -0.408 5.408 13 Si 0.814 3.186 14 H -0.183 1.183 15 H -0.176 1.176 16 H -0.187 1.187 17 C -0.142 4.142 18 C -0.084 4.084 19 N -0.111 5.111 20 H 0.117 0.883 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.182 0.818 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.004 -5.990 4.821 8.669 hybrid contribution 0.241 0.525 1.449 1.560 sum -3.763 -5.465 6.270 9.129 Atomic orbital electron populations 1.21714 0.92984 1.03586 1.01348 1.20019 0.97037 0.83780 1.05105 1.25317 1.10545 0.99440 0.81199 1.73757 1.14892 0.99766 1.25905 1.74907 1.31171 1.13593 1.07642 1.22140 0.98094 0.87562 0.91709 1.19695 1.27836 0.98948 0.91058 1.18924 0.87302 0.92372 0.90918 1.19952 1.35664 0.95383 0.95430 0.89045 1.26985 0.90457 0.98832 1.01474 1.69708 1.25696 1.20642 1.24799 0.84932 0.79551 0.77932 0.76175 1.18305 1.17628 1.18700 1.22535 0.98594 0.92907 1.00146 1.21749 1.05000 1.02402 0.79205 1.43526 1.47943 1.12484 1.07111 0.88253 0.93587 0.93745 0.88020 0.88409 0.87556 0.88090 0.81831 0.79349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.90 71.98 0.71 -2.61 15 2 C -0.02 -0.56 6.42 29.85 0.19 -0.37 15 3 C 0.10 4.29 7.38 137.59 1.02 5.30 15 4 N -0.31 -15.60 12.20 -49.46 -0.60 -16.20 15 5 N -0.43 -24.12 12.34 -55.66 -0.69 -24.81 15 6 C 0.25 13.49 7.86 133.52 1.05 14.54 15 7 C -0.35 -18.80 9.94 23.19 0.23 -18.56 15 8 C 0.11 5.65 5.73 -19.89 -0.11 5.54 15 9 C -0.44 -20.57 9.06 23.25 0.21 -20.36 15 10 H 0.09 4.24 7.90 -2.91 -0.02 4.22 15 11 C 0.04 1.82 5.20 85.27 0.44 2.27 15 12 N -0.79 -32.51 10.85 21.83 0.24 -32.27 15 13 Si 1.00 30.86 29.59 68.60 2.03 32.89 15 14 H -0.26 -8.24 7.11 99.48 0.71 -7.53 15 15 H -0.25 -7.26 7.11 99.48 0.71 -6.56 15 16 H -0.26 -7.89 7.11 99.48 0.71 -7.18 15 17 C -0.12 -5.23 8.82 23.60 0.21 -5.02 15 18 C 0.03 1.39 10.81 82.95 0.90 2.28 15 19 N -0.43 -19.79 2.96 -342.99 -1.02 -20.81 15 20 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15 22 H 0.04 1.21 8.14 -2.39 -0.02 1.19 15 23 H 0.10 2.62 8.14 -2.39 -0.02 2.60 15 24 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 25 H 0.11 5.78 8.06 -2.91 -0.02 5.76 15 26 H 0.31 10.95 8.30 -92.71 -0.77 10.18 15 27 H 0.16 6.66 6.22 -2.91 -0.02 6.64 15 28 H 0.19 5.49 8.05 -2.91 -0.02 5.47 15 Total: -1.00 -64.39 249.62 5.97 -58.41 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 1.17 Total: 19.79 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 4.84 Total: -17.01 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -2.07 Total: -94.08 kcal Atomic # 14 Polarization: 30.86 SS G_CDS: 2.03 Total: 32.89 kcal Total: -64.39 5.97 -58.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074940.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.812 kcal (2) G-P(sol) polarization free energy of solvation -64.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds