Wall clock time and date at job start Mon Mar 30 2020 02:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38665 * 119.79036 * 2 1 4 4 C 1.37790 * 120.49240 * 179.97438 * 3 2 1 5 5 C 1.39629 * 119.79382 * 359.97438 * 4 3 2 6 6 N 1.36025 * 133.33273 * 180.02562 * 5 4 3 7 7 C 1.30916 * 109.69262 * 179.97438 * 6 5 4 8 8 N 1.37887 * 125.09967 * 179.97438 * 7 6 5 9 9 N 1.37121 * 109.80348 * 359.97438 * 7 6 5 10 10 C 1.37362 * 126.42400 * 179.97438 * 9 7 6 11 11 H 1.08007 * 120.00077 * 33.81432 * 10 9 7 12 12 C 1.38860 * 120.00330 * 213.81362 * 10 9 7 13 13 N 1.31427 * 120.00184 * 19.57805 * 12 10 9 14 14 Si 1.86809 * 119.99960 * 199.58068 * 12 10 9 15 15 H 1.48500 * 109.47031 * 89.99891 * 14 12 10 16 16 H 1.48500 * 109.46903 * 210.00008 * 14 12 10 17 17 H 1.48493 * 109.46932 * 329.99739 * 14 12 10 18 18 C 1.38695 * 107.15774 * 0.02562 * 9 7 6 19 19 C 1.38042 * 119.79173 * 179.73795 * 2 1 3 20 20 H 1.08993 * 109.46940 * 89.99642 * 1 2 3 21 21 H 1.08994 * 109.46980 * 210.00089 * 1 2 3 22 22 H 1.09002 * 109.47039 * 329.99799 * 1 2 3 23 23 H 1.07993 * 119.75033 * 359.97438 * 3 2 1 24 24 H 1.07999 * 120.10570 * 179.97438 * 4 3 2 25 25 H 0.96994 * 120.00108 * 174.76760 * 8 7 6 26 26 H 0.96998 * 120.00056 * 354.76950 * 8 7 6 27 27 H 0.96998 * 120.00340 * 183.50385 * 13 12 10 28 28 H 1.07998 * 120.07702 * 359.92210 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2034 0.0000 4 6 3.5738 1.2203 0.0005 5 6 4.2823 0.0172 0.0016 6 7 5.6086 -0.2851 0.0028 7 6 5.7649 -1.5849 0.0040 8 7 6.9796 -2.2374 0.0049 9 7 4.5394 -2.2001 0.0043 10 6 4.3065 -3.5538 0.0050 11 1 4.9807 -4.2176 0.5259 12 6 3.2041 -4.0690 -0.6639 13 7 2.6100 -3.3584 -1.5963 14 14 2.5654 -5.7722 -0.2385 15 1 1.5495 -5.6650 0.8393 16 1 1.9474 -6.3840 -1.4423 17 1 3.6917 -6.6215 0.2254 18 6 3.5792 -1.1993 0.0026 19 6 2.1929 -1.1980 0.0055 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8899 0.5138 22 1 -0.3633 0.8900 0.5139 23 1 1.6485 2.1343 -0.0004 24 1 4.1040 2.1612 0.0001 25 1 7.0110 -3.2037 0.0824 26 1 7.8027 -1.7300 -0.0719 27 1 1.8099 -3.6966 -2.0280 28 1 1.6508 -2.1320 0.0110 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261123809.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:36 Heat of formation + Delta-G solvation = 49.395221 kcal Electronic energy + Delta-G solvation = -14324.764832 eV Core-core repulsion = 11954.187706 eV Total energy + Delta-G solvation = -2370.577125 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.41812 -38.36409 -35.96589 -34.76580 -33.06773 -31.61244 -30.31062 -27.05332 -26.44365 -23.27879 -22.06362 -21.57917 -19.48792 -18.40750 -17.54242 -16.68552 -16.24078 -16.16671 -15.85471 -15.15122 -14.57276 -14.40939 -14.17094 -13.66622 -13.08724 -12.98451 -12.77367 -12.43632 -12.29573 -12.24849 -11.91190 -11.44918 -10.66520 -10.50042 -10.42485 -8.98342 -8.39739 -8.06246 -6.37839 0.52641 1.03447 1.36805 1.41814 1.50520 2.06190 2.33420 2.48590 2.94319 3.23722 3.34271 4.11704 4.33087 4.49252 4.61883 4.86560 4.94933 4.97370 5.03269 5.20680 5.25138 5.38107 5.50430 5.80944 5.96788 6.04712 6.22325 6.32367 6.48543 6.79688 6.87602 7.61180 7.71231 8.47122 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.023214 B = 0.015153 C = 0.009548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.853720 B = 1847.355871 C = 2931.808393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.128 4.128 3 C -0.129 4.129 4 C -0.108 4.108 5 C 0.016 3.984 6 N -0.599 5.599 7 C 0.471 3.529 8 N -0.818 5.818 9 N -0.345 5.345 10 C -0.388 4.388 11 H 0.112 0.888 12 C 0.013 3.987 13 N -0.860 5.860 14 Si 0.997 3.003 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.252 1.252 18 C 0.027 3.973 19 C -0.074 4.074 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.086 0.914 23 H 0.152 0.848 24 H 0.129 0.871 25 H 0.413 0.587 26 H 0.421 0.579 27 H 0.280 0.720 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.949 0.755 2.681 3.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.149 4.149 4 C -0.129 4.129 5 C -0.105 4.105 6 N -0.333 5.333 7 C 0.116 3.884 8 N -0.375 5.375 9 N -0.026 5.026 10 C -0.515 4.515 11 H 0.130 0.870 12 C -0.196 4.196 13 N -0.491 5.491 14 Si 0.818 3.182 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.175 1.175 18 C -0.086 4.086 19 C -0.095 4.095 20 H 0.085 0.915 21 H 0.074 0.926 22 H 0.105 0.895 23 H 0.170 0.830 24 H 0.147 0.853 25 H 0.244 0.756 26 H 0.254 0.746 27 H 0.089 0.911 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.504 1.155 2.482 3.123 hybrid contribution -0.272 -1.730 -0.179 1.761 sum -1.776 -0.575 2.303 2.964 Atomic orbital electron populations 1.20594 0.89171 1.02805 1.02123 1.19877 0.97147 0.91862 1.04217 1.20812 0.92583 0.97810 1.03737 1.20199 0.93874 0.94450 1.04334 1.19269 0.89361 0.94214 1.07660 1.70364 1.17260 1.09563 1.36107 1.20076 0.82967 0.86933 0.98438 1.40514 1.01545 1.09488 1.85971 1.41124 1.02594 1.05611 1.53269 1.19899 1.15753 0.80107 1.35718 0.87046 1.26425 0.96907 1.03994 0.92247 1.70217 1.18603 1.41298 1.18949 0.84894 0.79107 0.76151 0.78049 1.19485 1.20145 1.17508 1.18955 0.92339 0.88278 1.08988 1.19937 0.90261 0.97719 1.01579 0.91503 0.92646 0.89491 0.83000 0.85291 0.75565 0.74627 0.91053 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.80 10.00 71.24 0.71 -2.08 15 2 C -0.13 -5.30 5.88 -19.81 -0.12 -5.42 15 3 C -0.13 -4.95 9.66 22.27 0.22 -4.73 15 4 C -0.11 -4.73 10.10 22.50 0.23 -4.51 15 5 C 0.02 0.83 7.22 39.38 0.28 1.11 15 6 N -0.60 -31.32 11.31 -189.90 -2.15 -33.47 15 7 C 0.47 23.65 8.91 260.27 2.32 25.97 15 8 N -0.82 -30.96 9.02 -58.22 -0.53 -31.49 15 9 N -0.34 -18.81 2.88 -344.48 -0.99 -19.81 15 10 C -0.39 -20.24 9.55 83.98 0.80 -19.43 15 11 H 0.11 5.32 7.68 -2.91 -0.02 5.29 15 12 C 0.01 0.63 4.55 84.90 0.39 1.02 15 13 N -0.86 -46.34 10.57 21.65 0.23 -46.11 15 14 Si 1.00 38.59 29.60 68.60 2.03 40.62 15 15 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 16 H -0.28 -10.48 7.11 99.48 0.71 -9.77 15 17 H -0.25 -9.07 7.11 99.48 0.71 -8.36 15 18 C 0.03 1.48 6.15 38.70 0.24 1.72 15 19 C -0.07 -3.71 8.19 22.32 0.18 -3.53 15 20 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.05 1.69 8.08 -2.39 -0.02 1.67 15 22 H 0.09 2.12 8.08 -2.39 -0.02 2.10 15 23 H 0.15 4.40 8.06 -2.91 -0.02 4.38 15 24 H 0.13 4.94 8.06 -2.91 -0.02 4.91 15 25 H 0.41 13.99 8.31 -92.71 -0.77 13.22 15 26 H 0.42 13.22 8.95 -92.71 -0.83 12.39 15 27 H 0.28 14.00 8.31 -92.71 -0.77 13.23 15 28 H 0.10 5.15 6.26 -2.91 -0.02 5.13 15 Total: -1.00 -67.05 244.84 3.45 -63.60 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.40 Total: 36.53 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 5.25 Total: -9.87 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -3.44 Total: -130.88 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -67.05 3.45 -63.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123809.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.999 kcal (2) G-P(sol) polarization free energy of solvation -67.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds