Wall clock time and date at job start Mon Mar 30 2020 03:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 11 11 C 1.38291 * 119.92377 * 269.72841 * 10 9 7 12 12 C 1.38106 * 120.07030 * 179.72940 * 11 10 9 13 13 C 1.38905 * 119.92612 * 0.54040 * 12 11 10 14 14 N 1.39681 * 120.07492 * 179.75073 * 13 12 11 15 15 C 1.46505 * 119.99668 * 359.97438 * 14 13 12 16 16 C 1.52995 * 117.49400 * 223.74736 * 15 14 13 17 17 C 1.52992 * 117.49769 * 155.08728 * 15 14 13 18 18 C 1.38909 * 119.85142 * 359.73176 * 13 12 11 19 19 C 1.38099 * 119.92715 * 359.97438 * 18 13 12 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.07996 * 119.96087 * 359.97438 * 11 10 9 24 24 H 1.07999 * 120.03356 * 180.27261 * 12 11 10 25 25 H 0.96992 * 120.00245 * 179.97438 * 14 13 12 26 26 H 1.08997 * 115.54996 * 9.41600 * 15 14 13 27 27 H 1.08997 * 117.50459 * 359.97438 * 16 15 14 28 28 H 1.09001 * 117.49912 * 145.02344 * 16 15 14 29 29 H 1.08996 * 117.50321 * 214.97860 * 17 15 14 30 30 H 1.09007 * 117.49798 * 359.97438 * 17 15 14 31 31 H 1.07999 * 120.03628 * 180.02562 * 18 13 12 32 32 H 1.07997 * 119.96458 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0079 11 6 2.6687 -4.1695 -1.2098 12 6 3.5704 -5.2156 -1.2202 13 6 4.0282 -5.7477 -0.0216 14 7 4.9362 -6.8091 -0.0284 15 6 5.4063 -7.3627 -1.3008 16 6 5.4741 -8.8860 -1.4263 17 6 6.7632 -8.0694 -1.3053 18 6 3.5813 -5.2218 1.1839 19 6 2.6843 -4.1718 1.1871 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 2.3087 -3.7584 -2.1413 24 1 3.9159 -5.6221 -2.1592 25 1 5.2554 -7.1797 0.8091 26 1 5.1310 -6.7961 -2.1903 27 1 5.1694 -9.4763 -0.5622 28 1 5.2438 -9.3216 -2.3986 29 1 7.3805 -7.9682 -2.1980 30 1 7.3064 -8.1222 -0.3617 31 1 3.9356 -5.6330 2.1176 32 1 2.3367 -3.7621 2.1240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:26 Heat of formation + Delta-G solvation = 43.727472 kcal Electronic energy + Delta-G solvation = -13508.034514 eV Core-core repulsion = 11240.751960 eV Total energy + Delta-G solvation = -2267.282554 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.07575 -37.35142 -34.00288 -32.51211 -30.22333 -29.69220 -26.10828 -23.19578 -22.74558 -22.49918 -20.89813 -19.86977 -17.27833 -16.21793 -16.08332 -14.90298 -14.74365 -14.17883 -13.78406 -13.07466 -12.96664 -12.82445 -12.41533 -12.24359 -11.73449 -11.47043 -11.17413 -10.99585 -10.62518 -10.55789 -10.51789 -10.05829 -9.63295 -9.38718 -8.88507 -8.35384 -8.22652 -6.73505 -5.95601 -4.00210 2.13489 2.34058 3.36096 3.39846 3.43414 3.49597 3.80097 4.45879 4.67357 4.70725 4.82165 4.90054 5.36897 5.45265 5.46276 5.55268 5.64459 5.76235 5.92092 6.07241 6.16393 6.33696 6.47556 6.72867 6.85973 7.31441 7.32241 7.44914 7.63308 7.84072 7.99583 7.99643 8.04700 8.42953 9.05406 9.63174 11.12770 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.055173 B = 0.005380 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.369993 B = 5203.007876 C = 5324.689528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.053 3.947 10 C -0.083 4.083 11 C -0.081 4.081 12 C -0.193 4.193 13 C 0.180 3.820 14 N -0.727 5.727 15 C 0.101 3.899 16 C -0.205 4.205 17 C -0.200 4.200 18 C -0.192 4.192 19 C -0.080 4.080 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.025 0.975 23 H 0.117 0.883 24 H 0.110 0.890 25 H 0.394 0.606 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.619 -14.237 -1.520 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.084 4.084 11 C -0.100 4.100 12 C -0.215 4.215 13 C 0.081 3.919 14 N -0.356 5.356 15 C -0.007 4.007 16 C -0.245 4.245 17 C -0.239 4.239 18 C -0.214 4.214 19 C -0.099 4.099 20 H 0.071 0.929 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.135 0.865 24 H 0.128 0.872 25 H 0.229 0.771 26 H 0.146 0.854 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.465 -14.112 -1.688 17.076 hybrid contribution 0.708 0.717 0.338 1.063 sum 10.174 -13.396 -1.351 16.875 Atomic orbital electron populations 1.69952 1.06011 1.26762 1.50845 1.25012 0.94853 0.99153 0.95372 0.86629 0.79546 0.83007 0.78680 1.20232 1.21298 1.20232 1.21098 0.93026 0.90113 1.50511 0.92610 1.18250 0.92502 0.89639 0.98011 1.20485 0.99032 0.97077 0.91817 1.20864 0.96085 0.94751 0.98254 1.20558 1.03839 1.01552 0.95569 1.17581 0.91256 0.88871 0.94154 1.43817 1.49376 1.36902 1.05539 1.21429 0.97537 0.92047 0.89673 1.23469 1.01907 0.95829 1.03263 1.23377 0.91534 1.05588 1.03390 1.20457 1.04088 1.01593 0.95251 1.20832 0.96056 0.94649 0.98340 0.92903 0.95665 0.95636 0.86531 0.87171 0.77142 0.85402 0.88904 0.88491 0.88349 0.88906 0.87378 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.56 9.09 -34.44 -0.31 -14.87 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.05 1.39 5.10 -29.03 -0.15 1.25 16 10 C -0.08 -1.85 5.07 -104.59 -0.53 -2.38 16 11 C -0.08 -1.63 9.69 -39.61 -0.38 -2.01 16 12 C -0.19 -3.37 9.32 -39.38 -0.37 -3.73 16 13 C 0.18 2.98 6.65 -83.79 -0.56 2.42 16 14 N -0.73 -9.50 5.74 -52.17 -0.30 -9.80 16 15 C 0.10 1.13 6.32 -67.93 -0.43 0.70 16 16 C -0.21 -1.89 10.46 -26.70 -0.28 -2.17 16 17 C -0.20 -1.80 10.46 -26.70 -0.28 -2.08 16 18 C -0.19 -3.32 9.90 -39.38 -0.39 -3.71 16 19 C -0.08 -1.61 9.69 -39.61 -0.38 -2.00 16 20 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 22 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 23 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 24 H 0.11 1.64 5.89 -52.49 -0.31 1.33 16 25 H 0.39 4.47 8.84 -40.82 -0.36 4.11 16 26 H 0.13 1.44 5.90 -51.93 -0.31 1.13 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 276.69 15.07 4.17 4.17 Total: -1.00 -30.39 276.69 -8.89 -39.28 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.32 Total: 2.72 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -4.16 Total: -27.05 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.44 Total: -35.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.39 -8.89 -39.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.006 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds