Wall clock time and date at job start Mon Mar 30 2020 03:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 11 11 C 1.38291 * 119.92377 * 269.72841 * 10 9 7 12 12 C 1.38106 * 120.07030 * 179.72940 * 11 10 9 13 13 C 1.38905 * 119.92612 * 0.54040 * 12 11 10 14 14 N 1.39681 * 120.07492 * 179.75073 * 13 12 11 15 15 C 1.46505 * 119.99668 * 359.97438 * 14 13 12 16 16 C 1.52995 * 117.49400 * 223.74736 * 15 14 13 17 17 C 1.52992 * 117.49769 * 155.08728 * 15 14 13 18 18 C 1.38909 * 119.85142 * 359.73176 * 13 12 11 19 19 C 1.38099 * 119.92715 * 359.97438 * 18 13 12 20 20 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 22 22 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 23 23 H 1.07996 * 119.96087 * 359.97438 * 11 10 9 24 24 H 1.07999 * 120.03356 * 180.27261 * 12 11 10 25 25 H 0.96992 * 120.00245 * 179.97438 * 14 13 12 26 26 H 1.08997 * 115.54996 * 9.41600 * 15 14 13 27 27 H 1.08997 * 117.50459 * 359.97438 * 16 15 14 28 28 H 1.09001 * 117.49912 * 145.02344 * 16 15 14 29 29 H 1.08996 * 117.50321 * 214.97860 * 17 15 14 30 30 H 1.09007 * 117.49798 * 359.97438 * 17 15 14 31 31 H 1.07999 * 120.03628 * 180.02562 * 18 13 12 32 32 H 1.07997 * 119.96458 * 180.02562 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0079 11 6 2.6687 -4.1695 -1.2098 12 6 3.5704 -5.2156 -1.2202 13 6 4.0282 -5.7477 -0.0216 14 7 4.9362 -6.8091 -0.0284 15 6 5.4063 -7.3627 -1.3008 16 6 5.4741 -8.8860 -1.4263 17 6 6.7632 -8.0694 -1.3053 18 6 3.5813 -5.2218 1.1839 19 6 2.6843 -4.1718 1.1871 20 1 -0.4851 0.8401 0.0004 21 1 0.6283 -2.5592 0.8921 22 1 0.6202 -2.5546 -0.8878 23 1 2.3087 -3.7584 -2.1413 24 1 3.9159 -5.6221 -2.1592 25 1 5.2554 -7.1797 0.8091 26 1 5.1310 -6.7961 -2.1903 27 1 5.1694 -9.4763 -0.5622 28 1 5.2438 -9.3216 -2.3986 29 1 7.3805 -7.9682 -2.1980 30 1 7.3064 -8.1222 -0.3617 31 1 3.9356 -5.6330 2.1176 32 1 2.3367 -3.7621 2.1240 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:25 Heat of formation + Delta-G solvation = 26.459785 kcal Electronic energy + Delta-G solvation = -13508.783297 eV Core-core repulsion = 11240.751960 eV Total energy + Delta-G solvation = -2268.031337 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39777 -38.39985 -35.65283 -34.27144 -31.68270 -31.39115 -27.89668 -24.89940 -24.19101 -23.19420 -22.22785 -21.25068 -18.53671 -18.38647 -17.13738 -16.72526 -15.86960 -15.71376 -15.15068 -14.55872 -14.37154 -14.23573 -13.99091 -13.60197 -13.21731 -13.11991 -12.51715 -12.43620 -12.39074 -12.31821 -11.64399 -11.49974 -11.34640 -11.27484 -10.57041 -10.27228 -9.69917 -8.27995 -7.92969 -6.29585 0.65971 0.85031 1.40415 1.43528 1.51835 2.42187 2.45671 2.96874 3.13517 3.23129 3.90243 3.96202 4.15081 4.19589 4.26973 4.50365 4.61255 4.76963 4.81105 4.82494 5.04751 5.11481 5.21386 5.26184 5.37666 5.39587 5.54291 5.70038 5.81460 6.03542 6.22426 6.25546 6.56976 6.83499 6.92218 7.38762 8.92705 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.055173 B = 0.005380 C = 0.005257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.369993 B = 5203.007876 C = 5324.689528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.063 3.937 10 C -0.123 4.123 11 C -0.090 4.090 12 C -0.194 4.194 13 C 0.196 3.804 14 N -0.716 5.716 15 C 0.069 3.931 16 C -0.194 4.194 17 C -0.184 4.184 18 C -0.190 4.190 19 C -0.089 4.089 20 H 0.265 0.735 21 H -0.002 1.002 22 H -0.002 1.002 23 H 0.111 0.889 24 H 0.138 0.862 25 H 0.405 0.595 26 H 0.126 0.874 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.139 0.861 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.204 -15.608 -1.695 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.125 4.125 11 C -0.109 4.109 12 C -0.216 4.216 13 C 0.095 3.905 14 N -0.345 5.345 15 C -0.038 4.038 16 C -0.233 4.233 17 C -0.223 4.223 18 C -0.213 4.213 19 C -0.108 4.108 20 H 0.074 0.926 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.129 0.871 24 H 0.156 0.844 25 H 0.241 0.759 26 H 0.144 0.856 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.157 0.843 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.086 -15.534 -1.866 19.770 hybrid contribution -0.028 0.969 0.374 1.040 sum 12.058 -14.564 -1.491 18.967 Atomic orbital electron populations 1.70084 1.07695 1.27906 1.51581 1.25944 0.95767 1.03100 0.94691 0.85504 0.78304 0.78138 0.79136 1.19290 1.20491 1.19298 1.21424 0.93036 0.91501 1.50589 0.92930 1.17986 0.92807 0.91334 0.95278 1.20176 1.00675 0.97696 0.93906 1.20858 0.97004 0.95807 0.97184 1.20753 1.02901 1.00556 0.97345 1.17671 0.90546 0.88827 0.93476 1.43859 1.48002 1.35537 1.07143 1.21658 1.00012 0.93493 0.88621 1.23516 1.01565 0.94085 1.04105 1.23450 0.90921 1.03550 1.04372 1.20663 1.03054 1.00516 0.97035 1.20838 0.96972 0.95738 0.97267 0.92639 0.98361 0.98365 0.87077 0.84435 0.75878 0.85619 0.88657 0.87251 0.86985 0.88297 0.84293 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.45 0.28 -57.42 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.53 -31.29 9.09 25.60 0.23 -31.06 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.06 3.54 5.10 29.10 0.15 3.68 16 10 C -0.12 -5.73 5.07 -19.84 -0.10 -5.83 16 11 C -0.09 -3.69 9.69 22.25 0.22 -3.48 16 12 C -0.19 -6.47 9.32 22.40 0.21 -6.26 16 13 C 0.20 6.05 6.65 38.21 0.25 6.30 16 14 N -0.72 -16.34 5.74 -318.97 -1.83 -18.17 16 15 C 0.07 1.30 6.32 44.99 0.28 1.59 16 16 C -0.19 -2.83 10.46 30.62 0.32 -2.51 16 17 C -0.18 -2.59 10.46 30.62 0.32 -2.27 16 18 C -0.19 -6.28 9.90 22.40 0.22 -6.06 16 19 C -0.09 -3.66 9.69 22.25 0.22 -3.44 16 20 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 21 H 0.00 -0.12 8.08 -2.39 -0.02 -0.13 16 22 H 0.00 -0.12 8.08 -2.39 -0.02 -0.14 16 23 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 24 H 0.14 3.77 5.89 -2.91 -0.02 3.75 16 25 H 0.41 7.65 8.84 -92.71 -0.82 6.83 16 26 H 0.13 2.43 5.90 -2.39 -0.01 2.41 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 1.30 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 32 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -67.07 276.69 3.55 -63.52 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.29 Total: 13.43 kcal Atomic # 6 Polarization: -51.50 SS G_CDS: 2.78 Total: -48.71 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -1.55 Total: -75.59 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -67.07 3.55 -63.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.977 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds