Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36813 * 120.00059 * 2 1 4 4 H 1.07994 * 120.00246 * 159.28901 * 3 2 1 5 5 C 1.38759 * 119.99531 * 339.28632 * 3 2 1 6 6 N 1.31612 * 120.00147 * 347.71813 * 5 3 2 7 7 Si 1.86800 * 119.99910 * 167.99596 * 5 3 2 8 8 H 1.48508 * 109.46976 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47346 * 119.99872 * 7 5 3 10 10 H 1.48494 * 109.47102 * 240.00201 * 7 5 3 11 11 C 1.39052 * 120.00442 * 179.97438 * 2 1 3 12 12 C 1.38588 * 120.20522 * 270.00348 * 11 2 1 13 13 C 1.38528 * 120.41210 * 179.97438 * 12 11 2 14 14 C 1.37990 * 120.55852 * 0.02562 * 13 12 11 15 15 C 1.38902 * 120.01711 * 0.02562 * 14 13 12 16 16 N 1.38079 * 133.99407 * 179.97438 * 15 14 13 17 17 H 0.96999 * 126.36061 * 0.02562 * 16 15 14 18 18 C 1.36092 * 107.27980 * 180.02562 * 16 15 14 19 19 N 1.30130 * 110.04683 * 359.97438 * 18 16 15 20 20 C 1.35657 * 109.64633 * 359.71856 * 19 18 16 21 21 H 1.09006 * 109.47312 * 84.90242 * 1 2 3 22 22 H 1.08993 * 109.47269 * 204.90541 * 1 2 3 23 23 H 1.09005 * 109.47602 * 324.90591 * 1 2 3 24 24 H 0.97004 * 119.99675 * 179.97438 * 6 5 3 25 25 H 1.08004 * 119.79497 * 0.02562 * 12 11 2 26 26 H 1.08007 * 119.72107 * 180.02562 * 13 12 11 27 27 H 1.07994 * 119.99031 * 179.97438 * 14 13 12 28 28 H 1.08006 * 124.97127 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1490 1.1848 0.0000 4 1 3.1766 1.2151 0.3308 5 6 1.5224 2.3476 -0.4251 6 7 0.3662 2.2813 -1.0504 7 14 2.3236 4.0067 -0.1166 8 1 3.6124 3.8094 0.5943 9 1 2.5722 4.6852 -1.4139 10 1 1.4230 4.8442 0.7155 11 6 2.1603 -1.2042 0.0005 12 6 2.5089 -1.8075 1.1985 13 6 3.2012 -3.0074 1.2041 14 6 3.5542 -3.6191 0.0186 15 6 3.2161 -3.0319 -1.1939 16 7 3.4163 -3.3775 -2.5157 17 1 3.8729 -4.1693 -2.8403 18 6 2.8539 -2.4008 -3.2785 19 7 2.3263 -1.4876 -2.5161 20 6 2.5090 -1.8196 -1.2136 21 1 -0.3634 0.0913 -1.0236 22 1 -0.3633 -0.9320 0.4327 23 1 -0.3634 0.8409 0.5908 24 1 -0.0720 3.0943 -1.3471 25 1 2.2384 -1.3396 2.1337 26 1 3.4668 -3.4680 2.1442 27 1 4.0942 -4.5542 0.0337 28 1 2.8458 -2.3863 -4.3584 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261164820.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = 104.906394 kcal Electronic energy + Delta-G solvation = -14190.691865 eV Core-core repulsion = 11822.521885 eV Total energy + Delta-G solvation = -2368.169980 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.38002 -37.11009 -34.91006 -32.33207 -30.97061 -28.77097 -27.99777 -25.79102 -23.41206 -21.87002 -21.46335 -20.21746 -17.56843 -16.69250 -16.13535 -15.23297 -14.69402 -14.53498 -13.88026 -13.58983 -13.06763 -12.98300 -11.99093 -11.60656 -11.17358 -11.07896 -10.79660 -10.74970 -10.45128 -10.07285 -9.88028 -9.85460 -9.22824 -8.51723 -7.78976 -7.23676 -6.83040 -5.65331 -3.13360 1.63089 2.19030 3.40728 3.44088 3.46577 3.49911 3.53050 4.51858 4.62968 4.94023 5.16518 5.46777 5.52997 5.66058 5.80011 6.00031 6.13790 6.27775 6.61712 6.82698 7.00306 7.05168 7.31623 7.44424 7.64508 7.82512 7.87909 7.91426 8.46774 8.65314 9.29394 9.98763 10.38128 11.39652 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.009968 C = 0.009049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.429741 B = 2808.428776 C = 3093.551523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.562 5.562 3 C -0.250 4.250 4 H 0.070 0.930 5 C 0.008 3.992 6 N -0.900 5.900 7 Si 0.908 3.092 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.288 1.288 11 C 0.278 3.722 12 C -0.169 4.169 13 C -0.085 4.085 14 C -0.156 4.156 15 C 0.049 3.951 16 N -0.614 5.614 17 H 0.413 0.587 18 C 0.223 3.777 19 N -0.452 5.452 20 C 0.029 3.971 21 H 0.037 0.963 22 H -0.003 1.003 23 H 0.050 0.950 24 H 0.252 0.748 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.110 0.890 28 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 -11.868 -0.373 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.281 5.281 3 C -0.378 4.378 4 H 0.088 0.912 5 C -0.191 4.191 6 N -0.544 5.544 7 Si 0.738 3.262 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.215 1.215 11 C 0.181 3.819 12 C -0.192 4.192 13 C -0.105 4.105 14 C -0.177 4.177 15 C -0.061 4.061 16 N -0.228 5.228 17 H 0.250 0.750 18 C -0.064 4.064 19 N -0.170 5.170 20 C -0.092 4.092 21 H 0.055 0.945 22 H 0.016 0.984 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.142 0.858 26 H 0.138 0.862 27 H 0.128 0.872 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.476 -10.839 -0.671 11.746 hybrid contribution 1.106 -0.208 -0.135 1.133 sum 5.581 -11.047 -0.807 12.403 Atomic orbital electron populations 1.20845 0.80755 0.95579 1.00097 1.41344 1.02255 0.99133 1.85321 1.19131 0.97239 0.83816 1.37592 0.91178 1.24999 0.97588 0.98431 0.98074 1.70124 1.17156 1.26644 1.40478 0.86134 0.78663 0.84015 0.77435 1.20283 1.21659 1.21522 1.17186 0.89800 0.86698 0.88197 1.21449 1.02958 0.96692 0.98121 1.20678 0.98123 0.95275 0.96412 1.19642 1.07470 1.01325 0.89313 1.18977 1.03500 0.98480 0.85165 1.43172 1.51043 1.23362 1.05186 0.74952 1.25368 0.96637 0.85708 0.98661 1.70523 1.20304 1.24830 1.01317 1.20277 1.02472 0.93541 0.92921 0.94491 0.98416 0.93161 0.93776 0.85760 0.86217 0.87218 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.53 8.95 59.84 0.54 5.07 15 2 N -0.56 -15.40 2.93 -120.31 -0.35 -15.75 15 3 C -0.25 -7.31 9.66 -15.14 -0.15 -7.46 15 4 H 0.07 2.04 7.86 -52.49 -0.41 1.63 15 5 C 0.01 0.23 5.12 -17.45 -0.09 0.14 15 6 N -0.90 -27.25 10.53 55.49 0.58 -26.66 15 7 Si 0.91 22.66 29.57 -169.99 -5.03 17.63 15 8 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 15 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 11 C 0.28 6.72 5.04 -83.60 -0.42 6.30 15 12 C -0.17 -3.40 9.95 -39.35 -0.39 -3.79 15 13 C -0.08 -1.39 10.02 -39.57 -0.40 -1.78 15 14 C -0.16 -2.49 10.06 -39.43 -0.40 -2.89 15 15 C 0.05 0.90 7.30 -84.00 -0.61 0.28 15 16 N -0.61 -8.86 6.24 -11.76 -0.07 -8.93 15 17 H 0.41 4.00 8.96 -40.82 -0.37 3.63 15 18 C 0.22 3.66 12.97 -89.72 -1.16 2.49 15 19 N -0.45 -10.39 11.27 -11.90 -0.13 -10.53 15 20 C 0.03 0.66 7.16 -84.52 -0.61 0.06 15 21 H 0.04 1.07 7.40 -51.93 -0.38 0.69 15 22 H 0.00 -0.07 8.01 -51.93 -0.42 -0.48 15 23 H 0.05 1.38 7.16 -51.93 -0.37 1.01 15 24 H 0.25 7.32 8.31 -40.82 -0.34 6.98 15 25 H 0.12 2.39 8.06 -52.48 -0.42 1.97 15 26 H 0.12 1.52 8.06 -52.48 -0.42 1.10 15 27 H 0.11 1.37 8.06 -52.49 -0.42 0.95 15 28 H 0.21 2.29 8.06 -52.48 -0.42 1.86 15 LS Contribution 248.00 15.07 3.74 3.74 Total: -1.00 -34.99 248.00 -7.73 -42.72 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -2.78 Total: -0.64 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.69 Total: -1.58 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.02 Total: -61.87 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -34.99 -7.73 -42.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164820.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.624 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds