Wall clock time and date at job start Mon Mar 30 2020 03:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36813 * 120.00059 * 2 1 4 4 H 1.07994 * 120.00246 * 159.28901 * 3 2 1 5 5 C 1.38759 * 119.99531 * 339.28632 * 3 2 1 6 6 N 1.31612 * 120.00147 * 347.71813 * 5 3 2 7 7 Si 1.86800 * 119.99910 * 167.99596 * 5 3 2 8 8 H 1.48508 * 109.46976 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47346 * 119.99872 * 7 5 3 10 10 H 1.48494 * 109.47102 * 240.00201 * 7 5 3 11 11 C 1.39052 * 120.00442 * 179.97438 * 2 1 3 12 12 C 1.38588 * 120.20522 * 270.00348 * 11 2 1 13 13 C 1.38528 * 120.41210 * 179.97438 * 12 11 2 14 14 C 1.37990 * 120.55852 * 0.02562 * 13 12 11 15 15 C 1.38902 * 120.01711 * 0.02562 * 14 13 12 16 16 N 1.38079 * 133.99407 * 179.97438 * 15 14 13 17 17 H 0.96999 * 126.36061 * 0.02562 * 16 15 14 18 18 C 1.36092 * 107.27980 * 180.02562 * 16 15 14 19 19 N 1.30130 * 110.04683 * 359.97438 * 18 16 15 20 20 C 1.35657 * 109.64633 * 359.71856 * 19 18 16 21 21 H 1.09006 * 109.47312 * 84.90242 * 1 2 3 22 22 H 1.08993 * 109.47269 * 204.90541 * 1 2 3 23 23 H 1.09005 * 109.47602 * 324.90591 * 1 2 3 24 24 H 0.97004 * 119.99675 * 179.97438 * 6 5 3 25 25 H 1.08004 * 119.79497 * 0.02562 * 12 11 2 26 26 H 1.08007 * 119.72107 * 180.02562 * 13 12 11 27 27 H 1.07994 * 119.99031 * 179.97438 * 14 13 12 28 28 H 1.08006 * 124.97127 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1490 1.1848 0.0000 4 1 3.1766 1.2151 0.3308 5 6 1.5224 2.3476 -0.4251 6 7 0.3662 2.2813 -1.0504 7 14 2.3236 4.0067 -0.1166 8 1 3.6124 3.8094 0.5943 9 1 2.5722 4.6852 -1.4139 10 1 1.4230 4.8442 0.7155 11 6 2.1603 -1.2042 0.0005 12 6 2.5089 -1.8075 1.1985 13 6 3.2012 -3.0074 1.2041 14 6 3.5542 -3.6191 0.0186 15 6 3.2161 -3.0319 -1.1939 16 7 3.4163 -3.3775 -2.5157 17 1 3.8729 -4.1693 -2.8403 18 6 2.8539 -2.4008 -3.2785 19 7 2.3263 -1.4876 -2.5161 20 6 2.5090 -1.8196 -1.2136 21 1 -0.3634 0.0913 -1.0236 22 1 -0.3633 -0.9320 0.4327 23 1 -0.3634 0.8409 0.5908 24 1 -0.0720 3.0943 -1.3471 25 1 2.2384 -1.3396 2.1337 26 1 3.4668 -3.4680 2.1442 27 1 4.0942 -4.5542 0.0337 28 1 2.8458 -2.3863 -4.3584 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261164820.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:51 Heat of formation + Delta-G solvation = 81.145640 kcal Electronic energy + Delta-G solvation = -14191.722209 eV Core-core repulsion = 11822.521885 eV Total energy + Delta-G solvation = -2369.200324 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.76925 -38.73877 -36.65073 -33.94106 -32.85544 -30.18817 -29.64050 -27.96540 -25.21856 -23.30962 -22.98773 -21.72779 -19.28483 -18.35860 -17.77593 -16.87839 -16.38828 -15.96836 -15.44003 -15.33728 -14.99695 -14.41497 -13.88644 -13.24315 -12.99950 -12.74168 -12.63836 -12.45184 -12.30963 -12.08866 -11.93998 -11.38714 -10.71167 -10.68271 -9.19397 -8.95079 -8.71365 -7.83357 -5.34628 0.22843 0.72716 1.43860 1.45434 1.56740 2.12392 2.22543 2.49685 3.08832 3.31482 3.56837 3.71091 4.11305 4.40803 4.49576 4.61440 4.68209 4.73772 4.96001 5.18507 5.24172 5.53962 5.61138 5.63084 5.68860 5.95783 6.14360 6.37663 6.73785 7.11796 7.25405 7.92449 8.30932 9.21151 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.009968 C = 0.009049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.429741 B = 2808.428776 C = 3093.551523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.574 5.574 3 C -0.259 4.259 4 H 0.062 0.938 5 C -0.049 4.049 6 N -0.935 5.935 7 Si 0.976 3.024 8 H -0.268 1.268 9 H -0.292 1.292 10 H -0.282 1.282 11 C 0.209 3.791 12 C -0.166 4.166 13 C -0.083 4.083 14 C -0.130 4.130 15 C 0.044 3.956 16 N -0.589 5.589 17 H 0.440 0.560 18 C 0.251 3.749 19 N -0.539 5.539 20 C -0.009 4.009 21 H 0.000 1.000 22 H 0.020 0.980 23 H 0.029 0.971 24 H 0.249 0.751 25 H 0.122 0.878 26 H 0.166 0.834 27 H 0.160 0.840 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.321 -14.397 -0.217 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.293 5.293 3 C -0.388 4.388 4 H 0.080 0.920 5 C -0.244 4.244 6 N -0.581 5.581 7 Si 0.803 3.197 8 H -0.192 1.192 9 H -0.219 1.219 10 H -0.209 1.209 11 C 0.114 3.886 12 C -0.188 4.188 13 C -0.103 4.103 14 C -0.151 4.151 15 C -0.068 4.068 16 N -0.204 5.204 17 H 0.283 0.717 18 C -0.037 4.037 19 N -0.258 5.258 20 C -0.129 4.129 21 H 0.019 0.981 22 H 0.038 0.962 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.140 0.860 26 H 0.183 0.817 27 H 0.178 0.822 28 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 6.744 -13.454 -0.510 15.059 hybrid contribution 0.500 0.349 -0.239 0.655 sum 7.244 -13.105 -0.749 14.993 Atomic orbital electron populations 1.20473 0.81583 0.95660 0.97582 1.41332 1.02123 1.00176 1.85703 1.19333 0.96947 0.85446 1.37061 0.91968 1.25813 0.98372 1.01894 0.98306 1.70304 1.18659 1.27152 1.41979 0.85083 0.78092 0.79410 0.77098 1.19221 1.21852 1.20851 1.17636 0.93388 0.87277 0.90261 1.21548 1.02837 0.97871 0.96586 1.21111 0.96727 0.93667 0.98782 1.20232 1.04943 1.02043 0.87843 1.19177 1.03074 0.97189 0.87327 1.43044 1.50045 1.23755 1.03560 0.71723 1.26212 0.93277 0.83989 1.00184 1.70430 1.24381 1.28621 1.02365 1.20351 1.04036 0.95800 0.92710 0.98124 0.96151 0.95183 0.94184 0.86035 0.81652 0.82218 0.72978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.78 8.95 127.77 1.14 11.93 15 2 N -0.57 -32.95 2.93 -534.55 -1.57 -34.52 15 3 C -0.26 -15.82 9.66 84.04 0.81 -15.01 15 4 H 0.06 3.77 7.86 -2.91 -0.02 3.75 15 5 C -0.05 -2.96 5.12 84.85 0.43 -2.52 15 6 N -0.93 -59.44 10.53 21.64 0.23 -59.21 15 7 Si 0.98 48.10 29.57 68.60 2.03 50.13 15 8 H -0.27 -12.58 7.11 99.48 0.71 -11.87 15 9 H -0.29 -14.33 7.11 99.48 0.71 -13.63 15 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 15 11 C 0.21 10.36 5.04 38.63 0.19 10.56 15 12 C -0.17 -6.57 9.95 22.42 0.22 -6.35 15 13 C -0.08 -2.40 10.02 22.28 0.22 -2.18 15 14 C -0.13 -3.52 10.06 22.37 0.23 -3.29 15 15 C 0.04 1.47 7.30 38.84 0.28 1.76 15 16 N -0.59 -14.77 6.24 -191.11 -1.19 -15.97 15 17 H 0.44 6.24 8.96 -92.71 -0.83 5.41 15 18 C 0.25 7.64 12.97 180.03 2.34 9.98 15 19 N -0.54 -25.00 11.27 -191.56 -2.16 -27.16 15 20 C -0.01 -0.43 7.16 39.62 0.28 -0.15 15 21 H 0.00 0.03 7.40 -2.38 -0.02 0.01 15 22 H 0.02 1.00 8.01 -2.39 -0.02 0.99 15 23 H 0.03 1.74 7.16 -2.38 -0.02 1.73 15 24 H 0.25 15.15 8.31 -92.71 -0.77 14.38 15 25 H 0.12 4.69 8.06 -2.91 -0.02 4.67 15 26 H 0.17 3.27 8.06 -2.91 -0.02 3.24 15 27 H 0.16 2.80 8.06 -2.91 -0.02 2.77 15 28 H 0.25 4.71 8.06 -2.91 -0.02 4.69 15 Total: -1.00 -82.48 248.00 3.84 -78.64 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 0.35 Total: 3.36 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 6.16 Total: 4.72 kcal Atomic # 7 Polarization: -132.16 SS G_CDS: -4.69 Total: -136.85 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -82.48 3.84 -78.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164820.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.783 kcal (2) G-P(sol) polarization free energy of solvation -82.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds