Wall clock time and date at job start Mon Mar 30 2020 03:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47565 * 2 1 4 4 C 1.50702 * 109.47161 * 120.00802 * 2 1 3 5 5 H 1.08000 * 120.00264 * 119.99850 * 4 2 1 6 6 C 1.37880 * 119.99616 * 299.99590 * 4 2 1 7 7 N 1.31516 * 119.99977 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99718 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47082 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46747 * 120.00275 * 8 6 4 11 11 H 1.48501 * 109.46942 * 239.99658 * 8 6 4 12 12 C 1.50709 * 109.47110 * 240.00275 * 2 1 3 13 13 C 1.35001 * 125.68374 * 325.00393 * 12 2 1 14 14 N 1.36845 * 107.09418 * 179.97438 * 13 12 2 15 15 C 1.36453 * 132.73695 * 179.97438 * 14 13 12 16 16 C 1.35575 * 119.07617 * 180.02562 * 15 14 13 17 17 C 1.40204 * 119.32769 * 0.02562 * 16 15 14 18 18 N 1.31223 * 120.37836 * 359.97438 * 17 16 15 19 19 C 1.34092 * 120.91782 * 0.02562 * 18 17 16 20 20 N 1.32520 * 131.94095 * 180.02562 * 19 18 17 21 21 H 1.09002 * 109.47316 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46996 * 299.99765 * 1 2 3 23 23 H 1.08997 * 109.47539 * 59.99450 * 1 2 3 24 24 H 0.97001 * 119.99387 * 180.02562 * 7 6 4 25 25 H 1.08000 * 126.45135 * 0.02562 * 13 12 2 26 26 H 1.08008 * 120.45806 * 0.27860 * 15 14 13 27 27 H 1.08000 * 120.33488 * 179.97438 * 16 15 14 28 28 H 1.07997 * 119.80735 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9436 0.8300 2.6034 8 14 2.3225 -1.1199 4.0078 9 1 3.1483 -2.2860 3.6035 10 1 3.1473 -0.1861 4.8160 11 1 1.1678 -1.5869 4.8164 12 6 2.0323 -0.7104 -1.2306 13 6 1.4479 -1.7759 -1.8185 14 7 2.2169 -2.1107 -2.8998 15 6 2.1103 -3.0897 -3.8443 16 6 3.0512 -3.1720 -4.8170 17 6 4.1089 -2.2517 -4.8289 18 7 4.1879 -1.3196 -3.9086 19 6 3.2644 -1.2268 -2.9409 20 7 3.1299 -0.3899 -1.9222 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 0.7096 1.1615 3.4845 25 1 0.5433 -2.2704 -1.4965 26 1 1.2857 -3.7868 -3.8197 27 1 2.9870 -3.9391 -5.5745 28 1 4.8628 -2.3103 -5.5999 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261180627.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:08 Heat of formation + Delta-G solvation = 102.543516 kcal Electronic energy + Delta-G solvation = -13875.185112 eV Core-core repulsion = 11506.912669 eV Total energy + Delta-G solvation = -2368.272442 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.49320 -38.00904 -34.50881 -33.89826 -31.24460 -30.04215 -27.92927 -25.18644 -24.19472 -22.98048 -22.07687 -19.36107 -17.81660 -17.11764 -16.31192 -15.82219 -15.62465 -14.63363 -14.20385 -13.68062 -12.98867 -12.89520 -12.57428 -12.04296 -11.56130 -11.36757 -10.94502 -10.73426 -10.39724 -10.27847 -10.01890 -9.80443 -9.28836 -9.13591 -8.39488 -8.33796 -7.57385 -6.01029 -4.07018 0.80885 1.39131 2.80708 3.30534 3.34504 3.39348 3.45477 3.95678 4.05813 4.45301 4.46988 4.71983 4.98034 5.27826 5.33106 5.65542 5.80521 5.96490 6.14870 6.54452 6.77105 6.88556 6.93081 7.17289 7.35230 7.68180 7.86313 7.96118 8.06715 8.34722 8.61289 8.93701 9.56709 11.05181 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.049336 B = 0.007391 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.403465 B = 3787.452864 C = 3914.472014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.107 3.893 3 H 0.050 0.950 4 C -0.502 4.502 5 H 0.055 0.945 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.136 3.864 13 C -0.107 4.107 14 N -0.401 5.401 15 C 0.112 3.888 16 C -0.225 4.225 17 C 0.148 3.852 18 N -0.435 5.435 19 C 0.358 3.642 20 N -0.467 5.467 21 H 0.029 0.971 22 H 0.091 0.909 23 H 0.011 0.989 24 H 0.261 0.739 25 H 0.184 0.816 26 H 0.167 0.833 27 H 0.156 0.844 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 -9.105 -12.885 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.087 3.913 3 H 0.068 0.932 4 C -0.540 4.540 5 H 0.073 0.927 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.003 3.997 13 C -0.236 4.236 14 N -0.079 5.079 15 C -0.021 4.021 16 C -0.249 4.249 17 C -0.039 4.039 18 N -0.147 5.147 19 C 0.011 3.989 20 N -0.189 5.189 21 H 0.048 0.952 22 H 0.110 0.890 23 H 0.030 0.970 24 H 0.071 0.929 25 H 0.201 0.799 26 H 0.184 0.816 27 H 0.174 0.826 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.751 -7.601 -12.313 14.490 hybrid contribution -0.866 -1.891 0.551 2.152 sum -0.114 -9.492 -11.762 15.115 Atomic orbital electron populations 1.21805 0.97104 0.99323 1.00814 1.17452 0.92445 0.95845 0.85511 0.93245 1.20974 1.31218 1.12346 0.89508 0.92653 1.24912 0.95040 0.95010 0.98864 1.69887 1.36717 1.22750 1.23441 0.86460 0.78597 0.79688 0.82823 1.19870 1.20882 1.20981 1.22126 0.88805 0.92902 0.95868 1.22551 1.02901 1.05648 0.92489 1.44028 1.21712 1.22317 1.19889 1.22081 1.00236 0.91365 0.88460 1.21596 0.97300 1.04446 1.01552 1.23089 0.96525 0.89140 0.95170 1.67798 1.22938 1.22316 1.01606 1.22119 0.87718 0.91314 0.97774 1.70756 1.19946 1.24118 1.04108 0.95210 0.89029 0.96963 0.92879 0.79933 0.81570 0.82643 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.54 37.15 0.32 -2.80 15 2 C 0.11 2.80 2.75 -92.92 -0.26 2.55 15 3 H 0.05 1.43 8.14 -51.93 -0.42 1.01 15 4 C -0.50 -14.09 8.55 -34.44 -0.29 -14.39 15 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -25.25 11.32 55.43 0.63 -24.62 15 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 15 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 15 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 12 C 0.14 3.25 5.93 -82.95 -0.49 2.76 15 13 C -0.11 -2.13 10.91 -16.46 -0.18 -2.31 15 14 N -0.40 -7.22 2.95 -64.40 -0.19 -7.41 15 15 C 0.11 1.38 11.07 -16.45 -0.18 1.19 15 16 C -0.22 -2.24 10.06 -39.80 -0.40 -2.64 15 17 C 0.15 1.81 11.27 -17.07 -0.19 1.62 15 18 N -0.44 -7.94 10.48 -13.70 -0.14 -8.08 15 19 C 0.36 7.60 8.92 -322.52 -2.88 4.73 15 20 N -0.47 -11.61 11.31 -10.66 -0.12 -11.73 15 21 H 0.03 0.64 7.25 -51.93 -0.38 0.26 15 22 H 0.09 2.36 6.07 -51.93 -0.32 2.05 15 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 15 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 25 H 0.18 3.10 7.34 -52.49 -0.39 2.72 15 26 H 0.17 1.35 8.06 -52.48 -0.42 0.93 15 27 H 0.16 0.84 8.06 -52.49 -0.42 0.42 15 28 H 0.17 1.33 8.06 -52.49 -0.42 0.90 15 LS Contribution 247.38 15.07 3.73 3.73 Total: -1.00 -33.59 247.38 -8.50 -42.09 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -2.73 Total: -2.83 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -4.65 Total: -7.64 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.17 Total: -51.85 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.59 -8.50 -42.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261180627.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.638 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds